Coccidioides posadasii: 9697520
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Entry
9697520 CDS
T01332
Symbol
SUB2_2, D8B26_007132
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cpw
Coccidioides posadasii
Pathway
cpw03013
Nucleocytoplasmic transport
cpw03015
mRNA surveillance pathway
cpw03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
9697520 (SUB2_2)
09122 Translation
03013 Nucleocytoplasmic transport
9697520 (SUB2_2)
03015 mRNA surveillance pathway
9697520 (SUB2_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpw03019
]
9697520 (SUB2_2)
03041 Spliceosome [BR:
cpw03041
]
9697520 (SUB2_2)
Enzymes [BR:
cpw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
9697520 (SUB2_2)
Messenger RNA biogenesis [BR:
cpw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
9697520 (SUB2_2)
Spliceosome [BR:
cpw03041
]
Complex C
Other components
EJC/TREX
9697520 (SUB2_2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
9697520 (SUB2_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ned1_M
Motif
Other DBs
NCBI-GeneID:
9697520
NCBI-ProteinID:
XP_003072025
UniProt:
C5NZI7
LinkDB
All DBs
Position
4:join(714241..714496,715076..715486,715554..715914,716035..716292,716361..716406)
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AA seq
443 aa
AA seq
DB search
MSHEEDLIDYSDEELQTTDAAAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHST
GFRDFLLKPELLRAITDCGFEHPSEVQQVCIPTAILKVDVLCQAKSGLGKTAVFVLTTLN
QLEPVPGECSILVMCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKD
TYPNIVVGTPGRLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRSTPADKQ
VMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLD
NLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVA
TDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGLSISFVSSEDDMKTLKDI
EKRFEVALPEYPEGGVDASTYMA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgtcccacgaggaagatctgatcgactactccgacgaggagctccagacaaccgatgcc
gctgctgctgccgccaccgccgccgcggctgcaaatggcgccgctgtgaaaaaaggtgac
ttgaccgtgtctggcgcgcgtgcggacaagaagggtagctatgttggcgtccactcgact
ggtttccgtgacttcctgctgaagccggagcttctgcgtgcgatcaccgattgcggtttc
gaacatccttcggaggtccagcaagtttgcatcccgaccgccatcctcaaagtcgatgtt
ttgtgccaggcaaagtccggtctgggaaagacagcagtcttcgttttgactaccttgaac
cagcttgagcctgttcctggcgagtgctcgatcctcgtcatgtgccatacacgagagctt
gcctaccagatcaagaatgagtatgctagattcagcaagtatctccccgatgtcaagacc
gcggtcttttacggtggaaccccaatgcaaaaggatatcgaagttctctcctccaaggac
acctaccccaacattgttgtgggtacacctggtcgactgaacgctttggtccgcgaaaag
aagctttcccttcgaaacatcaaagccttcgtcctagatgagtgcgataagatgctagac
cagatagacatgcgacgtgatgtccaggaaattttccgctccactcctgctgacaagcaa
gtcatgatgtttagcgccaccctttcccaggagattcggcccatctgcaagaagttcatg
cggaaccctctggaggtttacgtggacgatgacaccaagctaaccctccacggtttacag
caatactatatcaaactcagcgaggcggaaaagaaccggaaactcaacgagttattggat
aatcttgagttcaaccaagtcatcatcttcgtcaagagcaccctccgcgcgaacgagttg
gacaagcttctgcgtgaatgcaacttccctagcattgcagtgcactctggagtgtctcag
gaagagcgtatcaaacgttataaggaatttaaagaattcaacaagcgcatctgcgtcgcg
accgatgtattcggacgtggtatcgacatcgagcgtatcaaccttgccatcaattacgat
atgccggctgatgccgattcataccttcatcgtgtgggtcgtgctggccgttttggtacc
aaaggtctgtccatctccttcgtcagcagtgaggacgatatgaagacccttaaggatatt
gagaagcgattcgaagtggctctgcctgaatatcccgaaggaggagttgatgccagcacc
tacatggcgtaa
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