Coccidioides posadasii: CPC735_033450
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Entry
CPC735_033450 CDS
T01332
Name
(RefSeq) RNB-like family protein
KO
K18748
protein SSD1
Organism
cpw
Coccidioides posadasii
Brite
KEGG Orthology (KO) [BR:
cpw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpw03019
]
CPC735_033450
Messenger RNA biogenesis [BR:
cpw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
CPC735_033450
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Dis3l2_C_term
OB_Dis3
CSD2
Rrp44_CSD1
DUF5774
Motif
Other DBs
NCBI-GeneID:
9695649
NCBI-ProteinID:
XP_003070154
UniProt:
C5P5L9
LinkDB
All DBs
Position
Unknown
AA seq
1380 aa
AA seq
DB search
MDQQGQSGIPGPTGRRLHIAHRRSPSELTPLMMEQLALQQQIELLQQQQQQIAATHQQYV
NMGYLQPQQPLQHMTNAYSPTGIQGQGGIPNMPSHGNAFQFPQVQQQQLGVPMNNPNQPS
HRRNQSAMPNVGMGPPPAPSSGSAYGEFSQQGQTQSSQSRENGGQGRGRGAPGGGHQRRH
SLALPEARKAAELAQQKRTTSGFQFPIPGSSGASSSGQGERSSTPEEKAGTAATSTTPQA
PQGLGVHRAGNIRAGAHMRSQSLAVGNGRGPPARGVGGFQFPQTGDGPGDGQRRSSHQGH
GRTASRNFDSNWRQQGNQGQAQDQQRGSMGGFNQQQGAGGFQPGHRVRGSVNQSVGSIGS
FQYTGQPQLIQLPQGPVVMAPPQLFGAQHLGPLQLAQLQAMQQGGQLNGQNMSLQPNQQI
SPQLAAQQQQQQRKTLFTPYLPQANLPALLNDGQLVTGILRVNKKNRSDAYVTTPDLDAD
IFICGSKDRNRALEGDLVAVELLDVDEVWSQKREKEEKKKRKDITDTRSGSSAGIDKGRS
DSVTNGDSQIAPDGSIRRRGSLRQRPTQKKNDDVEVEGQSLLLVEEDEISDEHKPLYAGH
VVAVIERVPGQMFSGSLGLLRPSSQATKEKQEAERQARDGGHSRPQQERQQDKPKIVWFK
PTDKRVPLIAIPTEQAPRDFVEKHQDYANNIFVAAIKRWPITSLHPFGTLVEQLGTMGDL
NVETDALLRDNNFASDEFSDAVLKNVGFENWSLESESAASLASRRDFRDERTLTIDPNGS
NALDNAIHVKSLDDKVEIGFHVADVTHFIKFNSLVDREAKKRGTGVYLMTRIVNMLPPRL
SGEVCSLQPGEDRLTVSVVFRVDPKTGAVEDEPWIGKGIIKSSGKLTYDEIDAAIAGKEV
ELQAATLDEVKLLNSIASKFREARFGHRSADVPPLRLFYQLDDENVPVMHNIFDSSTAHE
LMEELSHKTNSLVAKRLFTAFPQKAFLRRQTSPNFRRLGTFVDRMSRLGYDMDSTSSGTL
QNSLFKIQDVDLRKGMETLLIKAMRRAKYYVAGTVRDEERQHYTLNLPLYTHFTNPSRRY
ADIIVHRQLDAMINNADFPEDIENLSKTADHCNNKKDSAQNAQEQSVHIESCRIIDKKRQ
EIGGDLISEGIVLCVYESAFDVLIPEYGFEKRVHCDQLPLKKAEFRKDERVLELYWEKGV
PSSAYIPEDERPKPTLSSRAANAAAAARQAEEARQRAREREEAQRKQTETGTMSTDDVDA
LFDDDEDDMSELAEMAAGVSLNSPADRSTQSMPPSPTRNGHVQTPHRTQSDPKIAISAAE
APEVKLSNKERYINLFKLREEDGEYIQDVTEMTRVPIILKTDLSKSPPCLTIRSVNPYAL
NT seq
4143 nt
NT seq
+upstream
nt +downstream
nt
atggatcaacaagggcagtctgggatcccaggtcccactggtagacggctgcatatcgcc
catcggagaagcccatcagagcttactcctcttatgatggagcaattagctttacagcaa
cagatagagctgcttcagcagcaacagcagcagatcgctgcaactcaccaacaatacgtt
aacatgggatatctacagccccaacaaccgctgcagcacatgactaacgcctactctcca
accggtattcaaggccaaggtggcatccctaacatgccatctcatggaaatgcgttccag
tttccgcaagtccagcaacaacagctcggcgttcccatgaacaatccaaatcaaccatcg
catcgccgcaaccaatctgctatgcctaatgttggaatgggtccccccccggctccctcc
tccgggtcagcttacggcgagttcagccagcaaggccaaacccaatcgagtcaaagtcgg
gagaatggcggtcaaggtcgtggtcggggtgcacctggtggtggacaccaacgtcgccac
tctttagctcttccagaagccagaaaagctgccgaactagcacaacagaaacgaactact
tccggcttccaatttccaatacccggctcttcgggcgcctctagttcaggccagggtgaa
agaagttccacgcccgaagaaaaagcgggcaccgctgccacgagcaccacgccgcaagcc
ccacaaggcttgggggtccaccgggctgggaatatccgtgccggtgctcatatgcgcagc
cagtctcttgccgttggtaatggtcgtgggcctcccgccaggggagttggcggattccaa
ttcccccaaactggagatggtcccggagacggacaacgccgctcaagtcatcaaggacat
ggtcgaactgcctctaggaattttgatagcaattggcgtcaacaaggcaaccagggccag
gcgcaagaccagcagagaggctccatggggggtttcaaccaacagcaaggcgcaggtggt
tttcagccgggtcaccgagtacggggctctgtaaaccagtccgttggctctattggttcc
ttccaatataccggacagcctcagctcatccagctgccccaaggaccggtcgtcatggca
ccacctcaacttttcggtgctcagcatctggggcctcttcaattagctcagttgcaggcc
atgcagcagggcggacagctgaacgggcaaaatatgtcactgcaacctaatcaacaaatc
agccctcagctcgcggcccaacagcagcagcaacagcgaaagaccctgttcaccccatat
cttcctcaagcaaacttgcctgccttgctcaacgacggacagctagtcactggtatctta
cgggtcaacaagaaaaatcggtccgatgcctatgttactacacctgaccttgatgcggat
atctttatctgtggcagcaaggatagaaacagagctcttgaaggtgatcttgtcgccgta
gaacttctcgatgtggacgaagtctggagtcaaaagcgtgaaaaggaagagaagaaaaag
cgaaaggatatcaccgatactcgaagtggcagctccgccggaattgacaaaggcagatcc
gattcagtcacaaacggagactctcaaatcgctcccgatggaagcattcgtcggcgaggt
agtcttcgacagcgcccaacacaaaagaagaatgatgacgtcgaagttgaaggacaaagt
cttttgcttgtcgaagaggatgagatcagcgatgagcacaagccattgtatgcgggtcac
gtcgttgctgtgatagagcgtgtgcctggccagatgttctccggttcgcttggtcttctt
cgtccaagtagccaggcaacaaaggagaagcaagaagctgaacgtcaagccagagatggt
ggccatagtcgacctcagcaggagcggcaacaggacaaaccaaaaatcgtctggttcaaa
cctaccgataagcgtgtgcctcttatcgctattcccacggagcaagctccgagagacttt
gtggagaagcaccaggactacgcaaataacatcttcgtggctgccatcaagagatggcct
attacttctcttcatccattcggaactctggtcgagcaattaggcaccatgggcgacttg
aacgttgaaacggacgctcttttaagagacaacaactttgcttccgatgaattttccgat
gccgtcttgaagaatgttggatttgaaaattggtctttagaaagtgaaagtgccgcatcg
ctcgcctcgcgtcgtgatttccgtgatgagaggaccttgaccattgatcccaacggctcg
aacgcattggacaacgcgattcatgtaaaatcgcttgatgataaagtcgaaatcggcttc
cacgttgctgatgtcactcatttcatcaagttcaactctctagtcgacagggaggcaaag
aagcgtggtactggggtgtacttgatgactcgcattgtgaacatgcttccacctcgtctt
tcaggcgaagtatgctctttgcagccgggagaagatcgcttgacagtcagcgttgtcttc
cgtgtggaccctaagacgggcgctgtcgaggacgaaccctggattggcaaaggaataatc
aagagctcagggaaattgacgtacgatgagatcgatgcagctattgctggcaaggaagtt
gagcttcaagccgctacccttgatgaagttaagctgctgaacagcatcgcgtcgaagttt
agagaagcccgcttcggtcatcgatcagcagatgtgccgccgctgagactattttatcaa
cttgacgacgagaacgtgcctgtcatgcataatatttttgactcttctacagctcacgag
cttatggaggaattaagccacaagacaaactccctcgttgctaaacggctatttacagct
ttcccccagaaggctttccttcgccgccagacatctcccaatttcaggagactgggaact
tttgttgatagaatgtccaggctcgggtacgacatggattccacaagtagtggaactctg
caaaacagccttttcaaaatccaggatgttgacttgcggaaaggcatggaaacacttctg
atcaaggctatgcgccgtgcgaagtattacgttgccggaaccgtccgggatgaagagcga
cagcattataccctcaacttgcctctttacactcactttactaacccgtcgcgccgctac
gcggatattattgtccaccgtcagttagatgcgatgataaataacgctgacttcccggag
gatattgaaaacctctctaaaaccgccgatcactgtaacaacaagaaggattctgcccag
aatgcgcaggaacagagcgttcacatcgaatcttgccgcatcattgacaagaaaagacag
gaaatcggaggtgacctcatcagcgagggcattgtcctttgtgtttacgaatccgctttt
gatgtgctcatcccagaatatggattcgaaaaacgagtacattgtgaccagctccctttg
aagaaggctgagttccgcaaggatgaacgcgtgcttgaactatactgggagaagggcgta
ccatcttccgcctacattcctgaagacgaacgaccaaagcctactctaagttcacgagct
gcgaacgctgccgctgctgctcgccaagcagaggaggccagacagcgagccagagaaaga
gaggaggcgcaaaggaaacaaactgaaacgggtaccatgtcgaccgatgatgtcgatgct
ctcttcgatgacgatgaggatgacatgtccgaattggcagaaatggcagcaggcgtatcg
ctcaactcgccagctgaccgctccacacagagtatgccaccatccccaacgagaaacggc
catgttcaaacgccgcatcggacccaatccgatccgaaaatagcgattagcgccgccgag
gctccagaggtcaaactttccaacaaggagagatatatcaacctctttaaacttcgcgag
gaagatggcgaatatatccaggatgttacagaaatgaccagagtgccaattattctaaag
actgaccttagcaagagtccaccgtgccttactattaggtcggtgaacccatatgcgctt
tga
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