Lachnoclostridium phytofermentans: Cphy_0112
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Entry
Cphy_0112 CDS
T00619
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cpy
Lachnoclostridium phytofermentans
Pathway
cpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cphy_0112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpy03400
]
Cphy_0112
Enzymes [BR:
cpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cphy_0112
DNA repair and recombination proteins [BR:
cpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cphy_0112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
MFD_D3
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ABX40501
UniProt:
A9KR33
LinkDB
All DBs
Position
149444..152983
Genome browser
AA seq
1179 aa
AA seq
DB search
MKTFTAPLQEYREFQVIEQSIQKNQFPLLITGCIDSQKCHLIHALSEGIVCKLVITYNDI
KAKEIYEDLKLYDRNVYLYPAKDIIFYSADIHGNAIVRERMRILKNLLERKPMTVVATID
GGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLIHLGYERQGQVENPGEFAIRGGIIDI
YPLTEEAPYRIELWGDEVDSIRTFDVGSQRSIERVSTAVIYPASEIILEPEALKNGLHKL
NIEQKEYVGKLRGELKTEEAARIHQIVEEFKENLECLQGSLNLDSYIRFFYDKTCSFFDY
FANDSSIIFADEPNRLAEKGEAVFTEFSESMVGRIEKGYILPSQMDVIYDYKELLANLSR
RNSVLISTMDHKVMQLAAKKKVDITVKSVNPYNNNFEILIKDLQNWKRNGYRVILLSGSR
TRAARLAQDLRDNELPAIYSEDVDRIPVKGEIVVMHGSVHRGFEYPLIKLVIISESDIFG
AEKKKKKKKPSYEGKQIQSFTDLNIGDYVVHENHGLGIYRGIEKIEVDKVSKDYIKLEYG
GGGVLYILATGLDVIQKYAGADARKPKLNKLNSVEWKNTKAKVKGAVKEIAKELVELYAT
RQAKAGHSFCEDTVWQREFEEMFPYEETDDQLRAIDDTKRDMESKKIMDRLICGDVGYGK
TEIAIRAAFKAISDGKQVVFLVPTTILAQQHYNTFSQRMMNFPISVDMLCRFKTPAQQKK
TLENLKKGQLDILIGTHRVLSKDIQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTL
TATPIPRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYY
VHNRVNGLDEITNTIARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETG
LDISNVNTMIIDNADQLGLSQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIK
EFTELGSGFKIAMRDLEIRGAGNLLGAQQSGHMEAVGYDLYCKMLNDAVKGLKGEISDED
TFDTSIDMDMDAFIPSTYIKNEMQKLDMYKRIAGIENEEEFMDMQEEMLDRFGDIPTSVN
NLLNIALLKSMAHQVYVSNLVQKGTEVKLSMYPKAKIKVEMIPELLLKVGNNLKMIPGAT
PFFTYHMANVIKNPKVGTIDTLAVFESVKNLLLEFQILV
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaaaacatttactgcacccttgcaggaatatcgggagtttcaagtaattgagcaaagc
attcaaaaaaatcaatttccactcttaataacaggatgtatcgattcgcagaaatgtcac
ctgatacatgcgctttctgaggggattgtatgcaagcttgtgattacttataatgatata
aaagcgaaagaaatctatgaagatttaaagctttatgatcgcaatgtgtatttatatccc
gctaaggatattattttttacagtgcggacatccatgggaatgccatagtcagagaacgt
atgagaattctgaagaatcttctagaacgaaaaccaatgacggtagtggcaacaattgat
ggaggtatggataagttattaccacttgattatctttcggataaaattatatgtattaaa
gaagattccacaattgaaattgaatgcttaagtgaaaagctaattcaccttggctatgaa
cgtcagggacaagtggaaaatccgggtgaatttgccatccgtggaggaattatagatatc
tatccattgactgaggaagctccttaccgtatcgagttatggggggacgaggtagactct
attcgtacctttgatgttggtagccaacgctctattgaaagagttagtacagcagttatc
tatccagcttctgaaattattttagagccagaggcacttaaaaatggacttcataagtta
aatatagaacaaaaagagtatgttggtaagttacgaggagagctaaaaaccgaggaagct
gcgaggattcatcagattgtagaggagtttaaggaaaatcttgaatgcttacaaggttct
ttaaatcttgatagttatattcgtttcttttatgataaaacatgttctttctttgattac
tttgccaatgatagctctattatatttgcggatgaaccaaaccgtctggcagaaaaaggc
gaagctgtatttaccgagttttcagagagtatggtaggacgtattgaaaaaggatatatc
ttaccaagccaaatggatgttatctatgactataaggaattgttagcaaacctaagtcga
agaaacagtgtattaataagtacgatggaccataaggtaatgcaacttgcagcaaaaaag
aaagtggatattaccgttaaaagtgtgaatccgtataataataactttgaaattctaata
aaagatttacaaaactggaagagaaacggttatcgtgtgattttactctctggctccaga
accagagcagcgagacttgcacaggatttaagagataatgaattgcctgctatctatagt
gaggatgtagatagaataccggtaaagggcgaaattgtggtaatgcacggcagtgttcac
cgtggatttgagtatccgttaattaagcttgttattatctcagaaagcgatatctttggt
gctgaaaaaaagaagaaaaagaaaaagcctagttatgaaggtaagcagatacaaagcttt
accgatttaaatataggtgattatgtcgtacacgaaaatcatgggttaggaatttatcgt
ggtatcgaaaaaatcgaagtggataaagtaagcaaagattatattaaattagagtatggt
ggtggcggagtactctacatcctagcgactggtttagatgttattcaaaagtatgccggt
gcagatgcgagaaagccaaaactgaataaattaaactcagtagagtggaagaatacaaaa
gccaaagtaaagggagcagtaaaagaaatagcgaaagaactagtagagctctatgcgacc
aggcaggcgaaggcaggtcattctttttgtgaggatacggtttggcaaagggaattcgaa
gagatgttcccatatgaagaaacagatgatcagctaagggcgattgatgacaccaaacgg
gatatggaaagtaaaaaaattatggatcgtttgatttgtggtgacgttggctatggaaag
acagaaatagcaattcgtgcagcatttaaagcaatttcggatggaaaacaagttgtattc
ttagtaccaacaacgatattagcgcagcagcattataatacatttagccagagaatgatg
aatttcccaattagtgttgatatgttatgtcgttttaaaactccagcgcagcagaaaaaa
acattagagaatttaaaaaagggacaacttgatatcttgattggaacccatagagtttta
tcaaaagatattcagtttaaaaatctaggacttttgattattgatgaggagcagcgtttt
ggtgttactcataaagaaaaaatcaaacagatgaaaggcgatatcgatgttctcactctt
accgccactccgattccaagaacccttcatatgagcttagttggaatcagagatatgagc
gttttggaagagccaccggttgaccgtttgccgatacagacctttgtcttagagcataat
gatgaaattataagagaggcaatcaaccgagaattagcaagaggcggtcaagtttattat
gtacacaaccgtgttaatggattagatgagataacaaatacaatagcaaggctggttcca
gatgccaatgtagcgtttgctcacgggcagatgcatgaacatcagctggaaaagattatg
tttgagtttataaatggtgaaatcgatgttttggtctcaaccacaattattgagaccggt
cttgatatatccaatgtaaataccatgattattgataatgcggatcaattagggttatcc
caattatatcagttacgtggacgtgttggacgttccaaccgtacctcgtttgctttcctt
atgtataaaagagataagttgctaaaggaagtcgcagagaagcgtttgcaggcaattaaa
gaattcacagagctcggatcaggatttaagattgcgatgcgtgaccttgaaattcgtgga
gctggtaatcttttaggtgctcaacaaagtggtcatatggaagctgtcggatatgattta
tattgtaagatgctaaacgatgctgtgaagggattaaagggagagattagtgatgaggat
acctttgataccagcatcgatatggatatggatgcctttattccgtctacttatattaaa
aatgaaatgcaaaaacttgatatgtataagcggatagctggaatagagaatgaagaagag
tttatggatatgcaagaagagatgctggatcgttttggagacattccaacctctgtaaat
aatctgttaaacatcgcattacttaagtcaatggcgcatcaggtgtatgttagtaatttg
gtccaaaaagggactgaggttaagctgtcgatgtacccgaaagctaagataaaagttgag
atgataccagaacttcttctaaaagtaggcaacaatctaaagatgattcctggtgccaca
ccgttttttacttatcatatggctaacgtgattaaaaatcctaaagttggaacgatagac
acattagcagtttttgagagtgtaaaaaatctattattagagtttcaaatccttgtttaa
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