Lachnoclostridium phytofermentans: Cphy_0224
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Entry
Cphy_0224 CDS
T00619
Name
(GenBank) DEAD_2 domain protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cpy
Lachnoclostridium phytofermentans
Pathway
cpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Cphy_0224
09124 Replication and repair
03420 Nucleotide excision repair
Cphy_0224
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpy03021
]
Cphy_0224
03036 Chromosome and associated proteins [BR:
cpy03036
]
Cphy_0224
03400 DNA repair and recombination proteins [BR:
cpy03400
]
Cphy_0224
Enzymes [BR:
cpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Cphy_0224
Transcription machinery [BR:
cpy03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Cphy_0224
Chromosome and associated proteins [BR:
cpy03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Cphy_0224
DNA repair and recombination proteins [BR:
cpy03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Cphy_0224
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
LED_rpt
Motif
Other DBs
NCBI-ProteinID:
ABX40611
UniProt:
A9KRY0
LinkDB
All DBs
Position
276345..278903
Genome browser
AA seq
852 aa
AA seq
DB search
MPDTDLKSIKISVRNLVEFIMKSGDLDNSVGKRDPDAMQEGSRLHRKIQRRMGPEYKPEV
ALRVTVPVSREDIEFELIIEGRADGIITNIEPTKEDNPILEEKPTLEEKPTLEEKPILEG
KPILEGNPILEENPTLGEHHPSEEHPSKQNGAEGNIHVIIDEIKCVYADISQITEMIPVH
RAQALCYAYIYAKERVLDTISIQITYCHLETEAIRILSEELKFKELSNWFQNLIQEYCKW
AAWQIKWMESRNESIKQIEFPFEYRPGQRDLVTGVYRTIIRDKKLYIEAPTGVGKTISTV
FPTVKAMGEGFVSKIFYLTAKTITRTVAEDTYQLLLERGLSMKLVTITAKDKICILDKPN
CNPAACERAKGHYDRVNDAVFDLLTSESRISRELIEQYAMKHCVCPFEMCLDVTLWADGI
ICDYNYAFDPNVYLRRFFENDKKQDYVFLIDEAHNLVDRAREMYSAMLYKQDFLTVKGIV
KDKSKTMVKRLEACNEVMLRLKRGCDDIEVLQDVNDLVLPLLRLMSEYEEFFKEYGDFEG
REVVSQLFFDLRKFLAIHDILGEDYLIYSDYDERGEFRVKLLCMDPARNLLTCLNKGRSS
IFFSATLLPITYYKEQLGGSEEDYAIYAPSPFEVSKRLLMIAKDVSTKYTRRGQDEYERI
VSYIEGFVNAKVGNYFVFFPSYQMLQQIAQLSEDRIPNLLLQKTSMGELEKEEFLAAFEE
NPTNTKVGYCVMGGIFSEGIDLKKDRLIGAVIVGTGLPQVGNERELFRGYYDDRNGSGFD
HAYLYPGINKVLQSAGRVIRTVEDKGAILLLDERFLNSQYKNLFPREWEQYDIVNQEKMQ
ELLEDFWSQKNE
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atgccggatactgacttaaaatcgataaagatatctgttcgtaatctagtagaatttata
atgaaatcaggggacttagataactctgttggaaaaagggatcctgatgccatgcaagaa
ggcagcaggctacatcgaaagattcagcgaagaatggggcctgaatataagccagaagtg
gcacttcgtgttacagttccggtgtcgagggaagatatcgaatttgagcttattattgaa
ggcagagcggatggcattattacgaatatagagcctactaaggaggataaccctattctg
gaggaaaaacctactttagaggaaaaacctactttagaggaaaaacctattttggaggga
aaacctattttggagggaaatcctattttggaggaaaatcctactttgggggaacatcat
ccttcagaggaacatccttcaaagcagaatggggcagaaggtaacatccacgttatcatt
gatgagataaaatgtgtttatgcggatatcagtcagattactgagatgattccagttcat
cgtgcacaagctttatgctatgcctatatttatgccaaggagcgagtactggatacaata
agtattcagattacctattgtcatcttgaaactgaggcaataagaattttatcggaagaa
cttaagtttaaggaactatcaaactggttccagaatttgatacaagagtattgtaaatgg
gcggcatggcagattaagtggatggagagcagaaatgaatccatcaaacagattgaattt
ccttttgaatatcgccctggacaaagagatttagtgactggcgtttaccggaccataata
agagataaaaaattatatatagaagcaccaacgggagttggaaaaaccatttcaacagta
tttccgacagtgaaggcgatgggagaaggctttgtttcaaaaatcttttatctgactgcc
aagacaattacacgtactgtcgcagaggatacttatcagttgctcttggagcggggctta
tcgatgaaacttgttacgataacagcaaaagataagatttgtatcttagacaagcctaac
tgtaatccggccgcatgtgaacgagccaaaggacactatgacagagtaaacgatgcagtt
tttgatttattaacgagtgaatcaagaatatcaagagaactgattgagcagtatgctatg
aagcattgtgtatgcccatttgagatgtgtcttgatgtgacattatgggcagatggcatc
atatgcgattataactatgcatttgatcccaatgtgtatttaagaagattttttgagaat
gataagaaacaggattatgtttttttgattgacgaggctcataacttagtagacagagca
agggaaatgtacagtgctatgctgtataaacaggattttttaacggtaaaaggtattgta
aaagataagtcgaagacaatggtgaagaggctcgaagcctgtaatgaggtaatgcttcgg
ttaaagcgtggttgtgatgacatagaagtattacaagatgtgaatgatttggtactgcct
cttttaagacttatgtcagagtatgaagagttttttaaggaatatggtgattttgaaggc
agagaggttgtatcacagctattttttgatctacgaaaatttcttgctattcatgacata
ttaggggaggactatctaatctattccgactatgatgagagaggagaatttcgtgtaaag
cttctttgtatggatcctgcaagaaacttattaacctgtttaaataagggaaggagttcc
atctttttttctgctacattattaccaattacgtattataaggaacagcttggcggttcc
gaggaagattatgctatctatgcaccctctccatttgaagtttcaaaaaggctgctcatg
atagcaaaagatgtcagtacaaaatatacaaggcggggtcaagatgagtatgagaggatt
gtttcctatatcgaaggctttgtaaatgcaaaggtagggaattattttgtgttctttcct
tcttatcagatgttgcaacaaatcgcccaattaagcgaagatagaatcccaaatctttta
ttacaaaagacaagtatgggagaactagagaaagaggaatttttagctgcgtttgaggaa
aatcctacgaatacgaaggttggctactgtgttatgggaggaatcttttcagaaggaatc
gacttaaagaaagatcgtttgattggtgcggtgattgtaggaacgggattaccgcaggtt
ggtaacgaaagagaattattccgtggatattatgatgatcgaaacggatctggttttgac
catgcttacctttacccggggattaataaagtacttcaatctgctggtagagtgattcgt
acggtcgaagataaaggagcgattttattgcttgatgaacgttttttaaattctcagtac
aaaaatctatttccaagagaatgggagcagtatgatatcgtaaatcaagagaaaatgcag
gaattattggaggatttttggagtcaaaaaaacgaataa
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