Lachnoclostridium phytofermentans: Cphy_0338
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Entry
Cphy_0338 CDS
T00619
Name
(GenBank) RNA binding S1 domain protein
KO
K06959
protein Tex
Organism
cpy
Lachnoclostridium phytofermentans
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09190 Not Included in Pathway or Brite
09192 Unclassified: genetic information processing
99973 Transcription
Cphy_0338
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tex_YqgF
HHH_3
Tex_N
Tex_central_region
HHH_9
S1
HHH_7
YqgF
S1_RRP5
ATP-synt_ab_C
HHH_6
T2SSK
DUF3535
Spt6_S1
Motif
Other DBs
NCBI-ProteinID:
ABX40725
UniProt:
A9KST1
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Position
425701..427869
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AA seq
722 aa
AA seq
DB search
MKIFEQLKEELGIKLEQVEATVKLIDEGNTIPFIARYRKEVTGSLNDEVLRSLSERLTYL
RNLEEKKASVLASIEEQGKLTEELKAQIEAAATLVVVEDLYRPYRPKRRTRATIAKEKGL
EPLAEIIIAQEISRDILELAEDYVSEEKEVSSAKDAVAGALDIIAESISDEADYRIHIRK
LTFEEGSITSAAKDAEAESVYELYYEYSEKISKVAGHRVLALNRGENEKFLTVKITAPTE
KIMNYLKGKVIKRDNPHTNDYLVVAIADSYDRLIAPAIEREIRNDLTEKAEDGAIVVFGQ
NLTQVLMQPPIAGQVVLGWDPAFRTGCKLAVVDATGKVLDTVVIYPTAPQNKVEEAKTVL
KKLFKKYQITLISVGNGTASRESEQIIVDLLKEITEPISYVIVNEAGASVYSASKLATEE
FPNFDVGQRSAASIARRIQDPLAELVKIDPKSIGVGQYQHDMNQKKLSEALGGVVEDCVN
KVGVDLNTASASLLEYISGISKPIAKNIVIYREENGKFKNRKQLLKVAKLGPKAFEQCAG
FLRINDGDNPLDGTSVHPESYEAAEKLLEMLEVKDLRELQAKAKEVDAKREQSISQKVKD
KKKMAQELSIGEITLTDIIKELEKPSRDPREEMPKPILRTDVLDMKDLTEGMILKGTVRN
VIDFGAFVDIGVHQDGLVHISQLSKQKFVKHPLDIVSVGDIVEVKVLSVDVSKKRIQLSM
IL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattttcgaacaattaaaagaagagttaggaattaaactggaacaggtcgaagct
actgtaaagctcatcgatgagggaaatacgataccttttattgctagatatcgaaaagag
gttaccggttctttaaatgatgaggtactacgaagtctatcagagcgtttaacctatctg
cgaaacttggaagagaagaaggcttctgtacttgcaagtatcgaagaacagggaaaatta
acagaagagttaaaggcacagattgaagctgcggcaaccttagtagtagtagaagactta
tatcgcccatatcgtccaaaacgtagaaccagagcgacaattgcaaaagagaagggattg
gagccactggcagaaatcatcattgctcaggaaatttctagggatatcttagaattagca
gaagactatgtatcggaagagaaggaagtaagttctgctaaagacgctgtagcaggagca
ctggatattattgcagaaagcatctctgatgaagcggattatcgtatccacatacgtaag
cttacctttgaagaaggaagtataacttccgccgcaaaggatgcagaagccgaatctgta
tatgaactttattatgaatatagtgaaaaaatttctaaggtagcgggtcacagagtttta
gccttaaatcgcggtgaaaatgagaaatttcttacagtaaagattacagcgccaactgag
aaaataatgaattatcttaagggtaaagtgataaagagagataatccacataccaatgat
tatcttgtagtagcaattgcagatagttatgaccgtttaatcgcacctgcaattgaacgt
gagatcagaaacgatttgacggaaaaagcagaggatggtgcaattgtagtctttggccag
aacttaactcaagtattaatgcagcctccaattgctggacaagttgtacttggatgggat
ccagcgtttcgtaccggttgtaagctggctgtagtagatgcaacaggaaaggtattagat
actgtagtaatctatccgacagcaccacaaaataaggtagaggaagcgaagacagtttta
aagaaattatttaagaaatatcagattaccttaatttctgttggaaatggtactgcttcc
agagaatccgagcagattattgtagacttattaaaagaaattactgagccaatctcttat
gtaattgtaaatgaggctggagcatcggtatattcagcaagtaagttagcaaccgaggag
tttcctaattttgatgttggacaaagaagtgccgcttctattgcaagaagaattcaggac
ccattagctgagttagtaaagattgatcctaaatcgatcggcgtaggtcaatatcaacac
gatatgaaccaaaagaaactaagcgaagcattaggcggagttgtagaagattgtgtaaat
aaagttggagtagatctaaatactgcatcagcttccttacttgaatatatttctggaatt
tcaaaaccaatcgctaagaatattgttatttaccgtgaggaaaatggaaagtttaagaat
cgaaagcaattattaaaggttgcgaaacttgggccaaaggcttttgaacaatgtgcagga
tttttacgaattaatgatggagataatcctctggatggaactagtgtgcatccagaatct
tatgaagcagctgaaaaacttctagagatgcttgaagtgaaagatttaagagagttacaa
gcgaaagcaaaagaagtagatgctaaaagagaacaatcgattagccagaaagttaaggat
aaaaagaagatggcacaggagctttcgattggtgaaattactttaactgatatcattaag
gaattagaaaaaccaagcagagacccaagagaagagatgccaaaaccaatcttaagaacc
gatgttcttgatatgaaagacttaactgagggtatgattttaaagggtactgtacgtaat
gtcattgattttggagcatttgttgatattggagttcatcaagatggtttggttcatata
tcacaattgtcaaagcagaaatttgttaagcacccacttgatatcgttagtgtaggagat
atagtggaagtaaaagttttaagtgtagatgtatcgaaaaaaagaatacaactctctatg
attttataa
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