Lachnoclostridium phytofermentans: Cphy_1154
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Entry
Cphy_1154 CDS
T00619
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cpy
Lachnoclostridium phytofermentans
Pathway
cpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cphy_1154
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpy03019
]
Cphy_1154
03400 DNA repair and recombination proteins [BR:
cpy03400
]
Cphy_1154
Enzymes [BR:
cpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cphy_1154
Messenger RNA biogenesis [BR:
cpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cphy_1154
DNA repair and recombination proteins [BR:
cpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cphy_1154
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
TniB
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
ABX41532
UniProt:
A9KN33
LinkDB
All DBs
Position
1453274..1455127
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AA seq
617 aa
AA seq
DB search
MNKEQILKKYYGYDSFRDGQEELINSILAGKDTFGIMPTGAGKSVCFQVPALMLSGITLV
VSPLISLMKDQVGTLNQMGVHAAYLNSSLTANQYRLALSYAKEGRYKIIYVAPERLLTEE
FLEFVRDVEISMLSIDEVHCVSQWGQDFRPSYLKIIDFVNQLPVRPIVSAFTATATKEVK
EDVIRLLGLQRATVVTTGFDRKNLYFAVKSPKDKYAELVSYLKEHQNMSGVIYCATRKAV
EEVAQRLEIEGYPVTRYHAGLSDVERHQNQDDFIYDVKPIMVATNAFGMGIDKSNVRFVI
HYNMPKNIESYYQEAGRAGRDGGRAECILLYGGQDVITNQLFIENNRENEELTGELLEAV
KIRDRERLKKMTFYCFTNDCLRHYILEYFGEKAEPTCDDCSNCLSEFEIIDITEISIKLI
QCVLETRQRFGLMTIVDTVHGSKSAKIKQFRLDEYACHNSLSDITIPRLRQIMNHLVLSG
YLLLTNSEYSILKVTDKAKELLEHRDAIELKVSKERERKAKSTETRSKKKAVYSLDTNDE
LFEELRVLRLSIARKEKVPPYIIFGDKTLLQMSQSLPTSKEEMLEITGVGEVKYEKYGAQ
FEDEIRRFQSNKKIINS
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
ttgaataaagaacaaattttaaaaaagtactatggttatgactcctttcgagatggacag
gaggagttgataaacagtattttagcaggcaaggatacgtttggtattatgccaacggga
gcaggaaaatcagtgtgttttcaagtccctgcgctaatgctttctggaataacactagta
gtatcaccattaatttctttaatgaaggatcaagtaggtaccttgaatcaaatgggagtc
catgcggcatacttaaacagctctttaactgcaaatcaatatcgactagcgttatcctat
gcgaaagaaggacgatataaaattatctatgtagcacctgagagattattaacagaggaa
tttcttgaatttgtgagggatgttgagatttcaatgttaagtattgatgaggtacattgt
gtatcccaatggggacaagattttcgtccaagttatttaaaaatcattgatttcgtaaat
cagttaccagtacgtccaatcgttagtgcatttaccgctactgctacgaaagaagtgaaa
gaggatgtaatccgattacttggattacagcgtgctacggtagttacgactggatttgac
cgtaagaatttatattttgcagtaaaaagtcctaaagataaatatgctgagcttgtttcc
tatctgaaggaacatcagaatatgagtggtgtcatttattgtgctacgagaaaagccgtg
gaggaagtagcgcagcgtttagaaattgaaggatatccggtaactagataccatgcggga
ttaagtgatgtcgaaaggcatcaaaatcaggatgattttatctatgatgtgaaaccaatt
atggtggcaacaaatgcatttggaatgggaatagataagtcgaatgtaaggtttgtcatt
cattataacatgccaaaaaacatagaaagctattatcaagaggctggacgcgcgggaaga
gatggggggcgtgcagaatgtattctgttatatggtggacaagatgtgattacgaatcag
ttatttatagaaaataatcgcgagaatgaagaattaactggtgaattgttagaggcagta
aagataagagatcgggaacgcttaaagaaaatgacattttattgctttacgaatgactgt
cttcgtcattatattttagagtattttggtgagaaagcagagccaacttgtgacgattgt
tccaattgcttatcggaatttgaaattattgatataaccgaaatcagtataaaattaatt
cagtgtgtattagaaacgaggcaacggttcgggttaatgacgattgttgataccgtacat
ggcagtaagtctgcgaaaataaagcagtttcgtcttgacgaatatgcatgccataattca
ttatcagatataacgataccaagattacggcagattatgaatcatcttgtactaagtggt
tatttattgctaacaaattcggaatattccatcttgaaagtaacagataaagcaaaagaa
ttattagaacatagagatgcgattgaactaaaggtttctaaggaacgagaaaggaaggcg
aaaagcaccgaaacacgaagtaagaaaaaagctgtgtattcattggatacgaatgatgaa
ctatttgaagaacttcgtgtcttacgtctatcaatcgctagaaaagaaaaagttccacct
tatataatatttggagataagacattactccagatgagtcagtctttaccaactagtaaa
gaagaaatgcttgaaattactggggttggtgaagtaaagtatgaaaaatatggtgctcaa
tttgaagatgagatccgtaggtttcaaagtaataagaagataataaatagttaa
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