Lachnoclostridium phytofermentans: Cphy_3424
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Entry
Cphy_3424 CDS
T00619
Name
(GenBank) ATP-dependent nuclease subunit B
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
cpy
Lachnoclostridium phytofermentans
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpy03400
]
Cphy_3424
Enzymes [BR:
cpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cphy_3424
DNA repair and recombination proteins [BR:
cpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Cphy_3424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
ACOX
Motif
Other DBs
NCBI-ProteinID:
ABX43777
UniProt:
A9KTE7
LinkDB
All DBs
Position
complement(4206896..4210411)
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AA seq
1171 aa
AA seq
DB search
MSFNKRHDMFSHEVPNKKLKGGERMSLQFVIGGSGAGKSYQLYQRVIESSLKEPKGKFLI
LVPEQFTLQTQKDLVTMHPKKGIHNIDILSFLRLAFRIFEETGGNDRLVLEDTGKSMIVK
KVMMEKRNDLILFGANVKKQGFVEEMKSIISELAQYSIHTDELQKMKEVAKGKPLLNHKL
TDIMTIYQAYEEFLQDKYINSEEILDLLCDVIDDSSFVNDSEICLDGFTGFTPSQYKLLS
HLMKKAKSVTVTITMDESQINRKQEEHQLFYLSGKMAEKLTDLAITQKIEIKPPILVASE
NGGYSYRFHNSMALSALEKNIFRYPYKSFTEEQDDISITAAKDPMAEARHAVIEITRLLR
EEEYRYKDIAIVSGAMEVYGDIVKRELELAGIPCFVDHKKNILTNPVVEFLRSALDVVTH
NFDYEAIFRFLKCGLTDFTMDEIDLFENYVIAFGIRGKYRYEHEWERKYKTNYEVDLEKI
NYVRECILKEFTPLYETLTSKKSSVRECVNALYNLLCTYHIEEKIHIFVEKFKAQGEKED
KLRAKEYEQIYRMVLEIFDRMVELLGEDVLPLKEFRDILDTGFREAKVGLIPPSIDQILV
GDIERTRLKDIKALFFLGVNDGIVPKANPGGGILSDAERQLFADHEIELSPTKRQTAYLT
EFYLYLNLTKPQNKLYLYYSKLDVSGKSIRASYLLGKISKIFPKLKIYDADRKSREDELL
GTDQGLSYLISVLRDYEGEQPKLWREVYHLYVSGQIKGRISLDKVLQGVFYQNYEQGLTK
EVARKLYGETLLGSVTRMEKYAACAFAHFLQYGLSLEERQEYKISMPDIGSLFHEALERF
SKALKELDISWHELPEDVRISLGERCVREAVENFGNGILESSKRSAYLATRVERILQRTT
KTLTHQLQQGVFEPGSYEQYFSHADRYLNLRGRIDRVDLYEQDGKLYVKVIDYKSGSTSF
DLMNLYYGLQLQLGVYLSAAMELMKEQYPNHEIHPAGVFYYNLDDPIVTKSSSVEEDIEK
KLAMNGLVNASKVVVPLLDTSFCGDEGELAPSTKSTVIPVETGKDGTFTKRSSVAKEEEL
ITLTDYIKDLMHRFSEQIMEGKVRHNPYRAKNRNACTYCSFQSVCGFDCKVSGFSYRNLK
TLNKEEVWNLIKKEDEFFGKDELDTGATEGN
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaataaaaggcatgacatgttttcgcatgaggtaccaaataaaaaattgaaa
gggggagaaagaatgtcactacaatttgtcatagggggttccggtgcaggaaagtcctat
caactatatcaaagagtaatagagagttcgctaaaggagccaaaagggaaatttctaatt
ctagttccagaacaatttacgctccaaactcaaaaagacttggtaacgatgcaccccaag
aagggcattcataacatcgatattcttagcttccttcgtttagcgtttcgcatttttgag
gagactggcgggaacgatcgtttagttcttgaagatactgggaaaagtatgattgttaag
aaagtaatgatggagaagagaaacgacctgattttatttggtgctaatgttaaaaagcag
ggatttgtagaagagatgaaatccattatctcagaattagcccagtatagcattcatacg
gatgaactgcaaaagatgaaggaagtagccaaaggaaagccacttcttaatcataaatta
acggatatcatgacaatttatcaagcctatgaggaattcctccaggataaatatatcaac
tcagaggaaatcttagatcttctttgtgatgttattgatgattcttcttttgtaaatgac
agtgaaatatgtttggatggatttacaggatttacaccatcgcaatataaattgctatcg
cacttaatgaaaaaggcgaagtcagttactgtaacaataacaatggatgaaagtcaaatt
aatcgaaaacaggaggaacatcaattattctatcttagcggtaagatggcggaaaagctt
acagaccttgcaataacgcaaaagatagagataaaacctccaattcttgttgcatcagaa
aatggtggatactcttatcgttttcataatagcatggcactttctgcattggaaaaaaac
atcttccgatatccatataaatcatttactgaggagcaagatgacatatcaattacagca
gcaaaagacccaatggccgaggcacgtcatgcagtgatagaaattacaaggttacttagg
gaagaagaatatcgttataaagatatcgctattgtttctggtgcgatggaggtttatggt
gatattgtgaaaagagagttggagctcgcaggcattccttgttttgtggatcataagaag
aatatccttacaaacccagtggtggaatttttgcgttctgcacttgatgtagtgactcat
aattttgattatgaagcaatatttcgtttcttaaagtgcggattaacggattttacgatg
gatgagatagacctttttgaaaactatgtgatagcgtttggtattcgaggaaaataccgt
tatgagcatgagtgggagagaaaatataaaaccaattatgaagtggatctagagaaaatc
aattatgttagagagtgtattttgaaagagtttacaccgctttatgaaactttaacaagt
aaaaagtcctcggtaagggaatgtgtaaacgctctttataacttattgtgtacttatcat
attgaagaaaagattcatatatttgttgaaaagtttaaggcgcaaggggagaaagaagat
aaactaagagccaaagaatatgagcaaatctatcgaatggttcttgaaatatttgaccga
atggtagaactacttggggaggatgtattaccgttaaaggaatttagagatattcttgat
acgggttttcgcgaagcgaaagttggtttgattcctccaagtattgatcagattctagtt
ggtgatatcgaacgtaccaggctaaaagatatcaaagcattatttttcttaggagtgaat
gatggaatcgtaccgaaagcaaatcctggtggtggaatattatccgatgcagagcggcag
ttatttgcggatcacgaaatcgaattatctccaacgaaacgccagaccgcttatcttaca
gagttttatctctaccttaatttaacaaagccacagaataagttatatctttattatagc
aaattagatgtttcgggaaagtcgattcgtgcttcttatttgcttggaaagataagtaaa
atatttccaaagcttaagatttatgatgcagatagaaaatcgagggaagatgagttactt
ggtacggatcaaggattaagctatctaatctctgtacttcgagattatgagggggaacaa
cctaaactttggagagaagtatatcatttatatgtgagtggtcaaatcaaaggtaggata
tcattagacaaggtattacaaggggtattttatcaaaactacgaacagggtttaaccaaa
gaagtggcaagaaagctttatggggaaacattacttggcagtgtaacccgtatggaaaaa
tatgcggcatgtgcttttgcacattttcttcagtatggtctaagtctagaagaacgtcag
gaatataagatttccatgcctgacattgggagcttgtttcatgaggcattggaacggttt
tcgaaagctttaaaagagttagatatttcatggcatgagcttccggaggacgttcgtatt
tctcttggagagcgctgcgtaagagaagcagtagagaattttggaaatggaattttagaa
agttcgaaacgaagtgcctatttagcaaccagagttgagaggatattgcaaaggacaacg
aaaactttaacgcatcagttgcaacagggagtatttgaacctggaagctatgagcaatat
ttttctcatgcggatcgatatctaaacttacgaggacgaattgaccgtgtggatttatat
gaacaggacggtaaactttatgttaaagttattgactataaatcaggtagtacatccttc
gacttaatgaatttatactatggtttgcaattgcagttaggtgtttacttaagtgctgct
atggaattaatgaaagagcagtatccaaatcatgagatacatccagctggagtattttat
tataatttagatgatcccattgttacaaaatctagctccgtagaggaggatattgagaag
aagttagcgatgaacggacttgtgaatgcatctaaggttgtagtgccgcttcttgatact
agcttttgtggagatgagggagaacttgcgccctcgacaaaatcaacagtaatcccggta
gagactgggaaggatggaacttttacaaagagatcttccgtagcaaaagaagaagaactt
attacattgacggactatatcaaagatctgatgcatcgtttcagtgagcaaatcatggag
ggaaaagtcaggcataatccttatagggccaagaatcgaaatgcctgtacttattgttcc
ttccaatctgtttgtggatttgactgtaaagtgagtggtttttcgtatcgtaatttaaag
acattaaataaagaggaagtttggaatttaatcaaaaaggaggatgagttttttggcaaa
gacgagttggacaccggggcaacagaaggtaattga
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