Lachnoclostridium phytofermentans: Cphy_3686
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Entry
Cphy_3686 CDS
T00619
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpy
Lachnoclostridium phytofermentans
Pathway
cpy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cphy_3686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpy03021
]
Cphy_3686
03400 DNA repair and recombination proteins [BR:
cpy03400
]
Cphy_3686
Enzymes [BR:
cpy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cphy_3686
Transcription machinery [BR:
cpy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cphy_3686
DNA repair and recombination proteins [BR:
cpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cphy_3686
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Tudor_krimper_1st
Motif
Other DBs
NCBI-ProteinID:
ABX44033
UniProt:
A9KJL3
LinkDB
All DBs
Position
complement(4526626..4530393)
Genome browser
AA seq
1255 aa
AA seq
DB search
MPTEMINESVKDITYDAIKIGLASPEKIREWSRGEVRKPETINYRTLKPEKDGLFCEKIF
GPNKDWECHCGKYKKIRYKGVVCDRCGVEVTKASVRRERMGHIELAAPVSHIWYFKGIPS
RMGLILDLSPRTLEKVLYFASYIVLDKGTTDLQYKQVLNEKEFREAYDKYGDRFRVGMGA
EAIMELLEAIDLEKESKDLKRGLKESTGQKRARIIKRLEVVEAFRESGNKPEWMIMTVVP
VIPPDLRPMVQLDGGRFATSDMNDLYRRIINRNNRLKRLLELGAPDIIVRNEKRMLQEAV
DALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKI
YQCGLPKEMAIELFKPFVMKELVAKGTAHNIKSAKKMVERLQPEVWDILEEVIREHPVML
NRAPTLHRLGIQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHLPLSVEAQAECRFL
LLSPNNLLKPSDGGPVAVPSQDMVLGIYYLTLQKPGDIGEGKYFKSVNEAILAYENGVIS
LHAMIKVRRTGLNAEGVEESRTIESTVGRFIFNEIISQDLGFVDRSKPENFLALEIDFHT
GKKQLKKILEKCINTRGATQTAETLDAIKSLGYKYSTRAAMTVSISDMTVPEAKKDIIER
AEKQVEDIAKNHRRGLMTEEERYKAVIETWKEADDEITKELLSGLDKYNNIFMMADSGAR
GSDKQIKQLAGMRGLMADTSGKTIELPIKANFREGLDVLEYFISAHGARKGLSDTALRTA
DSGYLTRRLVDVSQDLIIREVDCGEGTDEIPGMEIKAFMDGKEVIEGLEDRIIGRYACET
IYDDNGELIVKKNHIITPKRAARIVASKAFEDPNATIKIRTVLSCKSHIGVCAKCYGANM
ATGEAVQVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELFEARKPKG
LAIIAEFGGTVTIKDTKKKREVIVTRTSNDTLESKAYLIPYGSRIKVMDEQVIEAGDELT
EGSVNPHDILKIKGVRAVQDYMIQEVQRVYRLQGVEINDKHIEVIVRQMLKKVRVENNGD
AEFLPGTMVDILEYNDVNESLAAKGLEQAEGKQVMLGITKASLATNSFLSAASFQETTKV
LTEAAIKGKIDPLIGLKENVIIGKLIPAGTGMKHYRNVKLDTDQNQEITFSEDEFDNGNY
EGNFSGNDFKQNFYENEDFNSDEEVSFTEDEYFEDEENDLSTENFDDLKFSEEEE
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgccaacagagatgataaatgaaagtgtcaaggatatcacctatgacgcgattaagata
ggtttggcttcgccagagaagatcagagagtggtccagaggtgaagttagaaagccagaa
acaatcaattacagaacgctcaagccagaaaaagacggtttattctgcgaaaagattttt
ggaccaaacaaagactgggaatgtcattgtggtaaatacaaaaaaatccgctataagggc
gtagtatgtgaccgctgtggagttgaggttacaaaggcaagtgttcgtcgtgaaagaatg
ggtcacatcgaacttgcagctccagtgtctcatatttggtacttcaagggtatcccaagt
agaatgggtctaatcttagacctttctccaagaacccttgagaaagtgctatattttgca
tcttatattgtacttgataaaggaactaccgatttacagtacaaacaggtgttaaatgaa
aaagaattcagagaagcatatgataaatatggcgacaggttccgtgtaggaatgggcgct
gaagcgattatggaacttttagaggccattgatttagagaaagaatcaaaagacctaaag
agaggcttaaaagaatctacaggacaaaagagagctcgtattattaagagacttgaggtt
gtagaagctttccgtgagtctggaaataagcctgagtggatgattatgacagtcgttcct
gttatcccaccagatttacgtccgatggtacagttagacggtggccgttttgctacttct
gatatgaatgacttatatcgtagaattattaaccgtaacaatcgtcttaagagacttctt
gaacttggtgcgcctgatattatcgttcgtaacgagaagagaatgttacaagaagcggtt
gacgctttaattgataatggtagaagaggtcgtcctgtaactggtcctggtaatagacca
ttaaagtccttatccgatatgttaaagggtaagcaaggtcgtttccgtcagaacttactt
ggtaaacgtgttgactattctggtcgttccgttatcgtcgtaggtcctgaacttaagatt
taccagtgtggtcttccaaaggaaatggcaattgaattattcaagccatttgttatgaaa
gagttagttgcaaaaggaacagctcataatattaaatctgcaaagaagatggtagaaaga
ttacagcctgaggtatgggatatcttagaagaggtaatcagagagcatccagtaatgctt
aaccgtgctcctacccttcatagacttggtattcaggccttcgagccagtacttgtagaa
ggtaaggcaattaagttacatccacttgtatgtacagctttcaacgccgacttcgacggt
gaccagatggcggtgcatctaccacttagtgtagaagctcaggcagagtgtcgtttcctt
ttattatcacctaacaacttgttaaaaccatccgatggtggtcctgttgcggttccatct
caggatatggtacttggtatttactatttaacacttcaaaaaccaggtgacattggagaa
ggtaagtattttaagagtgtaaatgaagcaattcttgcttatgaaaatggtgtaatctca
cttcatgcaatgattaaagttcgtagaactggtcttaacgcagaaggtgtagaggaatcc
agaacaatagagtctaccgtgggaagattcatctttaatgaaattatttcgcaggatctt
ggttttgttgatcgtagcaagccagaaaacttccttgcacttgaaattgatttccacaca
ggtaagaagcagttaaagaagatccttgagaaatgtatcaatactcgtggtgcaactcag
actgcagaaactctagatgcgattaagtctttaggttataaatactctactcgtgcagcg
atgacagtatccatttctgatatgactgtaccagaagcaaagaaagacattatcgaacgt
gcagaaaagcaggtagaagatatcgccaagaatcatcgtcgtggtttgatgactgaggaa
gagcgttataaagcagttattgaaacttggaaagaagccgatgatgaaattacaaaggaa
cttctttctggacttgataaatataataacatcttcatgatggctgactctggtgcccgt
ggttccgacaagcagatcaaacagttagctggtatgcgtggtcttatggcagatacatct
ggtaagacaatcgagttgcctatcaaggcgaacttccgtgaaggtcttgacgtacttgag
tacttcatctccgcacacggtgctcgtaaaggtctttccgacactgctcttcgtactgcc
gactctggttacttaactcgtcgtcttgtagacgtatctcaggatttaattatccgtgag
gttgactgtggtgaaggtactgatgaaattccaggtatggaaattaaagccttcatggat
ggaaaagaagtaattgaaggattagaagacagaattataggtcgttatgcatgcgagaca
atctacgatgataatggtgagttaattgtgaagaaaaatcacatcatcacaccaaagcgt
gctgctcgtatcgtagcaagcaaagcattcgaagatccaaatgcaacgattaagattcgt
accgttctttcttgtaaatcacacatcggtgtttgtgctaagtgttacggtgcaaacatg
gctactggtgaagcagtacaggttggtgaagcagttggtattattgcggctcagtcaatc
ggtgagccaggtacacagcttacaatgcgtactttccatactggtggtgttgcgggtgat
gatattactcagggtcttcctcgtgtcgaggaacttttcgaggcaagaaagccaaaggga
cttgcaattatcgcagaattcggtggtactgttacaattaaggataccaagaagaagcgt
gaagttatagttactagaacaagtaatgatactttagaatcgaaagcatacttaattcct
tacggttctagaattaaggttatggatgaacaggtaattgaagctggtgatgagttaaca
gaaggttctgtaaacccacatgatatcttaaagattaaaggtgttcgtgcagttcaggat
tacatgattcaggaagttcaaagagtttaccgtttacagggtgtagaaatcaacgataag
catatcgaagtgattgttcgccagatgttaaagaaggttcgtgttgagaataatggtgat
gcagaattcttaccaggaactatggtagatatcttagagtataacgatgtaaatgaaagc
ttagcagcgaagggattagaacaagcagaaggaaaacaggtaatgcttggtattaccaag
gcttctcttgcaacaaactctttcctttccgcagcatccttccaggaaacaacgaaagtt
cttacagaagcagcgattaaaggtaagattgatccactgattggtcttaaggaaaacgta
attatcggtaagcttattccagcaggtaccggtatgaaacactatcgcaatgttaagtta
gatacggatcagaatcaggaaattacattctctgaggatgagtttgacaatggaaattac
gaaggtaatttctccggtaatgactttaaacaaaacttctatgagaatgaagactttaat
tcggatgaagaagtaagcttcactgaggatgaatatttcgaagatgaagaaaatgatctt
tccactgagaattttgatgatttaaaattttctgaggaagaagagtaa
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