Lachnoclostridium phytofermentans: Cphy_3818
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Entry
Cphy_3818 CDS
T00619
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cpy
Lachnoclostridium phytofermentans
Pathway
cpy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cphy_3818
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpy03019
]
Cphy_3818
03009 Ribosome biogenesis [BR:
cpy03009
]
Cphy_3818
Enzymes [BR:
cpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cphy_3818
Messenger RNA biogenesis [BR:
cpy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cphy_3818
Ribosome biogenesis [BR:
cpy03009
]
Prokaryotic type
rRNA helicases
Cphy_3818
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
PolC_DP2_N
Cas3-like_C_2
Hyccin
Motif
Other DBs
NCBI-ProteinID:
ABX44165
UniProt:
A9KL16
LinkDB
All DBs
Position
complement(4671174..4672757)
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AA seq
527 aa
AA seq
DB search
MTIRFDEMELQTPIIRAIEELGYEEMTPIQAQAIPVVLEGKDIVGQAQTGTGKTAAFSIP
ILQKIDPKVKGLQAVILCPTRELAIQVSDEMHKFSKFMHGIKAIPIYGGQDITRQIRSLK
AGVQIVIGTPGRVMDHMRRKTVKFDKVSMIALDEADEMLNMGFREDIETILKEMPEDRQT
LLFSATMPQPIMDIARTYQKDATIVKVVKKELTVPKIEQYYYEVRPKNKVDVLSRLLDMY
SPKRCLVFCNTKRQVDELVTALSGRGFFAEGLHGDLKQQQRDRVMSSFRTGKAEILVATD
VAARGIDVDDVEAVFNYDVPQDEEYYVHRIGRTGRAGRTGRAFTLVVGKEVYKLRDIQRY
CKTKIKVMPIPSVNDVTAVKAEKILDRINELMDAEDLTKMISIIEAKINESDYTALDVAA
AFLKMAMGSDSQPEEQAVPDFGDTGAEQGMVRLFINLGKKQNIRPGDILGAIAGETGMPG
KLIGSIDMYDKYTFVEVPREYAADVIQVMKESKIKGKSINIEPANHK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgacaattagatttgatgaaatggagttacaaactccgattattagagcaatcgaggag
cttggttatgaagaaatgacaccgattcaggctcaagcaataccggttgttttagagggg
aaagatatcgtaggtcaggctcagactggtactggaaagactgctgcgttttctattcca
atattgcaaaaaatcgacccaaaggtaaagggtcttcaggcagttatactttgcccaaca
agagagcttgcaattcaggtatctgatgagatgcataaattctctaagtttatgcatggg
attaaagcaataccgatttacggtggccaagacattacgagacagattcgttcactaaaa
gcaggagttcagattgtaatcggtactccaggtcgtgttatggatcacatgagaagaaaa
acagtaaagtttgataaggtttctatgattgctttagatgaggcggatgagatgttaaac
atgggattccgtgaagatattgagactatcttaaaggaaatgccagaagaccgtcaaaca
ttattattctcagctactatgcctcagccaattatggatattgcaagaacatatcaaaag
gacgctactatagtaaaggtagtaaagaaagagttaacagttccaaagatagagcaatac
tactacgaagtaagacctaagaataaggttgatgtattatctagattattagatatgtat
tctccaaagcgttgcttagtattctgtaacacaaagcgtcaggtagatgaattagttact
gcattatctggccgaggattctttgcagaaggtcttcacggtgatttaaagcagcagcaa
agagaccgtgttatgagttctttccgtactggtaaagcagaaatcctagttgctaccgat
gtagcagcaagaggtattgacgtagatgatgtggaagcagtatttaattatgatgtacca
caggatgaagaatattatgtacaccgtattggacgtaccggtagagcaggaagaactgga
cgtgcatttactttagtagttggaaaagaagtatataaattaagagatatccagcgttat
tgtaaaactaagattaaagttatgcctattccatctgttaatgatgtaacagcagttaag
gcagaaaaaatcttagaccgcattaatgagctaatggatgcagaagatttaacaaaaatg
atttccattatcgaagctaagataaatgaatcagattatacagctcttgatgtcgcagcc
gcattcttaaagatggcaatgggaagtgatagtcaaccagaagaacaagcagttcctgac
tttggtgatactggagctgagcaaggaatggttcgtttatttatcaatcttggtaaaaag
caaaacattagaccaggtgacatcctaggtgcgattgcaggcgagacaggaatgccagga
aagcttattggtagcatcgatatgtatgacaaatatacctttgttgaggtacctagagaa
tatgcagcagatgtcattcaagtgatgaaggaatcaaagattaaaggtaaatcgattaat
atagaaccagcgaaccataagtaa
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