Corynebacterium pyruviciproducens: CYJ47_05135
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Entry
CYJ47_05135 CDS
T09618
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cpyr
Corynebacterium pyruviciproducens
Brite
KEGG Orthology (KO) [BR:
cpyr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpyr03019
]
CYJ47_05135 (hrpA)
Enzymes [BR:
cpyr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CYJ47_05135 (hrpA)
Messenger RNA biogenesis [BR:
cpyr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CYJ47_05135 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
ResIII
NACHT
ABC_tran
RsgA_GTPase
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WOT03151
UniProt:
A0AAF0YX36
LinkDB
All DBs
Position
complement(1090842..1094858)
Genome browser
AA seq
1338 aa
AA seq
DB search
MTNSAPTKKSLYDRLGALTLLDERRFRARLKKARTDKALTAIEKDLLHAEKRAQSIAEHI
PAISYPDALPVSQRVDDIAEAIANNQVVIIAGETGSGKTTQIPKICLELGRGRRGMIGHT
QPRRIAARTVAERIADEVGQHVGDSIGYAIRFDDKVGPHTAVKIMTDGILLAEMQRDRFL
NAYDTIIIDEAHERSLNIDFILGYLKRLLPKRPDLKIIITSATIDPERFAHHFADKRGKP
APIIEVSGRTYPVEIRYRPLVDTVDGKDIDIDVHEGLISAIQELMAEGPGDILCFFAGER
DIRDAMETLNKANLPRVEVTPLFGRLSNAEQHRVFAPHKGRRIVLATNIAETSLTVPGIH
YVVDTGLARISRYSNRTKVQRLPIEPISQASANQRSGRCGRVANGIAIRLYSEQDFQARP
EFTDPEIQRTNLASVILQMALLKLGDIRNFPFIQPPEERSIRDGLQLLQELGAITEHNAA
DSTLRLTDIGRDIASIPVDPRLARMIIEAQRLHVLAPVTIIVAALSLQDVRERPLEKQQQ
ADQIHARFKDRSSDLMGYLALWAYLCSLKDRLSGNQYRKRLQREFLHFMRAREWRDLVRQ
LVSIYEGLYWNVDTSLLWCEDIPDLTAPPNLGGGEASSHKGKDSRTQITPVSAAHSYFSD
SDSIHKALLSGLLSHIGARKGDSKEYAGSRGTSFLIFPGSALTKKPPEFIMAAELVDTSR
LWARGVASIDPAWVEELAPHLVKKTYFEPHWSSKRCAAMVHEKVLVYGVPVVADRLIQYG
SVDEEAARDMFIRHALVEGDWTTHHSFFHENQEKLLQVRDLEEKARRRDITVDDDTLFTF
YDRILPAHITSGIRFDHWWKRRRQKDPHLLDFDPDKLINPDAATVEEDQFPDVWRQGTLE
FELSYHFEPGSPFDGVTVRVPLPLLATADPAAFTWQVPGLRKELVTELIRSLPKHYRRLL
VPAPDYADKVLPRLIPYEGTLVEQLAAVFQTMGLHDLETQDFHPESLSPHVRLTFAAVDR
RGKITDSDKDLEALQARRSGQIRSSIRKAAKNSKSKTVRSWTQETLGEIPETVDTKVDGQ
EVKAYPALVAGNDGLSMQAMPTKAAADAAMVKSTLTMLLNAISVGTKGMLKGLPIQQQVA
VENYPHGGAEGLVNDARVASIRDLMFAHGGPVRNPDQFAELKKNVTEETPGYVRRTVTVL
APALYEYESLREELKLWDGPAIDDIKKQLDAILPPNAVSTFGIERLKHLRRYVQAARLRL
TDLETSPDRDADRQDVMDRLNGQLTSKLATKPASIRHSKQYKDLIWMMQELRVSLFAQKL
GTAHKVSEKKISKMISAL
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgactaactccgcccccacaaagaaatccctctacgacagactcggcgcactcacgttg
ctggacgagaggcgattccgcgcgcgcctcaagaaggcccggacggacaaggctcttacc
gcgattgaaaaggatcttctccacgcagagaaacgggctcagtccatcgcggagcacatt
cccgcaatcagctaccccgatgccctccccgttagccagcgggttgatgacatcgccgaa
gcgatcgcgaataaccaggtagtcatcatcgcgggcgaaacggggtcgggcaagacaaca
cagattccaaaaatctgcctcgaactcgggcgcgggagacgtgggatgatcggtcacacg
caaccacgcaggattgcggcccgcaccgtcgcggagcgcatcgccgatgaagtaggacag
cacgtgggcgactccatcgggtacgccatcaggttcgacgacaaggtcgggcctcatacc
gctgtcaagatcatgacagacggcatcctgctcgccgaaatgcaacgggaccggttcctc
aacgcgtacgacacgatcattatcgacgaggcccacgagcgttccttgaacatcgatttc
atcctcggttacctcaagaggttgctccccaagcgaccggatctcaaaatcatcattacc
tccgcaaccattgatcccgagcggttcgcccatcactttgcggataaacggggcaaaccg
gcccctattattgaggtttcagggcgcacgtacccagtggaaattcggtatcgccccctg
gtagacacggtcgacggcaaagacatcgatattgacgtgcacgaagggctgatctcggcg
atccaggagctcatggccgagggacccggcgatatcctctgcttcttcgcaggcgagcgt
gatatccgcgatgcaatggagacccttaacaaggccaacttgccccgagtagaggtgacg
cccctgttcggcagactttcgaacgccgagcagcaccgtgtatttgcacctcacaaggga
cgtcgaatcgtccttgccaccaacatcgcagagacgtctctcactgtgccggggattcac
tacgttgtggatacgggcctcgcccgaatttcccgttactctaaccgcacaaaggtccag
cgtctacccattgagccgatcagtcaggcatcggcaaaccagaggtccggacgctgcggc
cgtgtcgcaaacggaatcgcgatccgactctattcggagcaagatttccaagcccgcccg
gaattcaccgatcctgaaatccaacgcacgaacttggctagcgtgatcctccaaatggca
ctgctgaaactgggagatattcgtaatttcccattcattcagccacccgaggagcgatca
atccgtgacggccttcagctactccaagaactcggcgctatcacggagcacaatgcggcc
gattccactctccgtctgaccgacatcggccgagacatcgccagcatacccgtcgatccg
cgcctagcgcgcatgatcatcgaggcgcagcgccttcacgtattggcgcccgtcaccatc
atcgtcgcggcactgagcttacaggacgtccgagagcgtccactggagaagcagcaacag
gccgatcagattcacgcgcggttcaaggatcgttcgtctgacctcatgggttacctcgcg
ctgtgggcatacctgtgttcgctcaaggaccggctctccggaaaccaatacagaaagcgc
ctgcagagggaattcctccacttcatgcgcgcacgagaatggagggacctggttcgccag
ctagtttccatctacgaggggctgtattggaacgtcgacacctcgctgctgtggtgcgaa
gatattccggatctcacggccccgccgaacctcggtggcggggaagcgtcatcccacaaa
ggaaaagactcccgtacccaaatcaccccggtttcggcagcccattcctacttctctgac
tccgattccatccacaaggctctcctcagtggtcttttgtctcacattggagcgcggaaa
ggcgattccaaggagtacgccggttcccgtggcacaagcttcctcattttccccggttcg
gcactaacaaagaagccgccggaattcatcatggcggctgagctggttgatacctctcgg
ctgtgggcacgtggggttgcctcgattgaccctgcctgggtggaagaattagcaccccac
ctggtgaaaaagacgtacttcgagccacactggtcaagtaagcgctgcgccgccatggtg
catgagaaagtgttggtctatggtgttccggttgtagccgatcgcctcattcaatatgga
tcagtcgacgaggaagccgcccgcgacatgttcatccgtcacgccttggttgagggtgat
tggacgacccaccacagcttcttccacgagaaccaagagaagctgttgcaggttcgtgac
ctggaggagaaggcgcgcaggcgtgatatcaccgttgacgatgacacgctatttacgttt
tatgatcgcatcctcccggcgcacattacctctgggattcgtttcgaccattggtggaaa
cgccgaaggcaaaaggatccacatctcctcgatttcgaccccgacaagctcattaacccg
gacgcggcaacggttgaagaggaccagtttcctgatgtctggcgccaggggacgttggag
ttcgagctgtcctaccactttgaaccgggttcccctttcgacggtgtgacggtgcgcgta
ccgcttccgctcctcgctacggccgaccccgccgctttcacgtggcaggtcccgggcttg
cgcaaggaactggtaactgagctcatccgcagcttgcccaagcattaccgccgcctgctc
gtgcccgcgccggattacgccgacaaggtgctgcctcgtctcattccatacgagggaacg
ctcgtcgagcagctcgctgcggtgttccagaccatgggactccacgatctggagacgcag
gacttccatcccgaatcactatctccccacgtgcggctgacgtttgccgccgtagacagg
cggggcaaaatcactgactcggacaaggacctggaggctttgcaagcccgacggtcaggc
caaattcgctcctccatccgcaaggccgcaaagaattccaagtcaaagacggtacgctcg
tggactcaggaaactctcggagagatccccgagaccgtggatacgaaagtcgatggccag
gaggtaaaggcttacccggcactcgtagctggtaacgatggcttgtccatgcaagccatg
cccaccaaagccgcagcggacgctgccatggtcaagtccactttgacgatgctcctcaat
gcaatatcggtgggcacgaagggaatgctcaaagggctgcctattcaacaacaggtagct
gtggagaattatccccacggcggtgccgaggggttggtcaacgacgcgcgagttgcaagt
attcgcgacctcatgtttgcccacggtggcccagtgcgtaatccggatcaattcgccgag
ctgaagaagaacgtgactgaagaaacacccggctacgttcgacgcaccgtcacagtcctc
gccccagccttgtacgagtacgagtctctgcgagaggagctgaagttgtgggatggccca
gcaatcgatgacataaagaaacagttggacgcaattcttccccctaacgcagtctctact
ttcggaatcgagaggttaaaacacctgcgacgctacgttcaggcggcgaggcttcggttg
accgatcttgagacctcaccggatagagatgccgataggcaagacgtgatggacaggtta
aacgggcagttgacctcaaagctcgccacaaagcccgcttccatccgccatagcaaacaa
tacaaagatctcatctggatgatgcaggaattgcgggtcagcctatttgcacaaaagctc
ggcaccgctcacaaggtttccgagaagaagatctcgaagatgatctccgccctgtaa
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