Corynebacterium pseudotuberculosis PAT10: CpPAT10_0328
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Entry
CpPAT10_0328 CDS
T01879
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cpz
Corynebacterium pseudotuberculosis PAT10
Pathway
cpz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cpz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CpPAT10_0328 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cpz03021
]
CpPAT10_0328 (rpoC)
03400 DNA repair and recombination proteins [BR:
cpz03400
]
CpPAT10_0328 (rpoC)
Enzymes [BR:
cpz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CpPAT10_0328 (rpoC)
Transcription machinery [BR:
cpz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CpPAT10_0328 (rpoC)
DNA repair and recombination proteins [BR:
cpz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CpPAT10_0328 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AEK91660
LinkDB
All DBs
Position
342655..346782
Genome browser
AA seq
1375 aa
AA seq
DB search
MKRSPGRTGGKGSYVIDVNFFDELRIGLATADDIRRWSKGEVKKPETINYRTLKPEKDGL
FCERIFGPTRDWECACGKYKRVRYKGIICERCGVEVTKSKVRRERMGHIELAAPVTHIWY
FKGVPSRLGYLLDLAPKDLERIIYFAANIITGVDEEARHSDQTTLEAEMLLEKKDVEADA
ESEIAERAQKLEEDLAELEAAGAKADARNKVQKAADKEMQHIRERAEREIDRLEEIWQTF
IKLAPKQMIIDETIYEELVDRYEDYFTGGMGAEAIQTLIRNFDLDAEAEELREIINNGKG
QKKMRALKRLKVVAAFQRSGNDPAGMVLDCIPVIPPELRPMVQLDGGRFATSDLNDLYRR
VINRNNRLKRMIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLL
KGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLHECGLPKLMALELFKPFVMKRLVENDYA
QNIKSAKRMVERQRPEVWDVLEEAISEHPVMLNRAPTLHRLGIQAFEPKLVEGKAIQLHP
LACEAFNADFDGDQMAVHLPLSAEAQAEARILMLASNNILSPASGKPLAMPRLDMVTGLY
YLTMDKTEGEIGGQGAYQPATEDGPATGVYSSYAEALMARDRGVLGLQAKIRVRISHLRP
PVEVEAEQFPEGWEQGQTWLADTTLGRIMFNELLPWNYPYLEGVMVRKGGGSNKILLGDV
INDLAATYPMITVAQTMDKMKDAGFYWATRSGVTITMSDVLVLPNKEEILDRYEAEAAKI
ERKYWEQGALTERERYDRLVELWKEATDEVGNAVEKLYPDDNPIPMIVKSGAAGNMRQIW
TLAGMKGMVVNSKGDYITRPIKTSFREGLSVLEYFNNSHGSRKGLADTALRTADSGYLTR
RLVDVAQDVIVREDDCGTKQGIRVPVAVEVKDAQGNVTGYTGHSLIETSVAGRVASVDIK
DSEGNVLVPAGENLTDQLIEKLIAAGVAEVKVRSVLTCQTPTGVCAKCYGKSMATGKLVD
IGEAVGIVAAQSIGEPGTQLTMRTFHQGGVGGDITGGLPRVQELFEARVPKNRAPIASVA
GTVHLEDEGNFYTLTINPDDGSDVVVYEKLSKRQGLATVRVPMESNPGAMIERTLSEGDH
VNVGDRLLRGPADPHDVLEVLGRRGVEQHLVDEVQDVYRAQGVAIHDKHIEIIIRQMLRR
GTVIESGATEFLPGTLVDLSEAKAANAEAIAAGGHPAELRSEIMGITKASLATESWLSAA
SFQETTRVLTDAAINKRSDKLIGLKENVIIGKLIPAGTGISRYRNISVKPTEAARNAAYS
IPTYGDSIYGDGLRQRLLVLRHPTRCPLKALSSSTPMCVPWAKAKRFHRRFRATG
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
ttgaaacgatcccctgggagaaccggggggaaagggagttacgtgatcgacgtcaacttc
ttcgacgagctccgcatcggcctggctactgccgacgacattcgtcgttggtccaaaggc
gaggtcaaaaagccggagaccatcaactaccgcaccctgaagccggagaaggacggcctc
ttctgcgagcgaattttcggcccaacccgcgactgggagtgcgcttgcggtaagtacaag
cgtgtccgttacaagggcatcatctgtgagcgctgtggcgttgaggtgaccaagtccaag
gttcgccgtgaacgcatgggccacatcgaactggctgcgcccgtcacccacatttggtac
ttcaagggtgtcccgtctcgtctcggttaccttttggacctggctccaaaggatctcgag
cgcatcatttacttcgcagccaacatcatcactggtgttgacgaggaagctcgccacagc
gaccagaccactcttgaggcagaaatgcttttggagaagaaagacgttgaggctgacgca
gagtctgagatcgcagagcgcgctcagaagctggaagaggaccttgccgagctggaagcc
gcaggcgctaaggccgatgcccgcaacaaggtgcaaaaggctgcagataaagagatgcag
cacatccgcgagcgggctgagcgcgagatcgatcgtcttgaggagatctggcagaccttt
atcaagcttgctcctaagcagatgatcattgatgagaccatctatgaagagctcgtggat
cgttacgaggattacttcaccggtggtatgggcgcggaggccatccaaacccttatccgc
aactttgacctcgatgctgaggcagaggaactgcgcgagatcatcaacaatggcaaaggc
cagaagaagatgcgtgccctcaagcgactcaaggttgttgctgcattccagcgctcgggc
aatgacccagctggtatggtgctcgactgcatcccggtgatcccaccggagctgcgtccg
atggttcagctcgatggtggccgttttgctacctccgacctgaacgatctctaccgtcgc
gtgattaaccgcaacaaccgcctcaagcgcatgatcgacctcggtgctcccgagatcatc
gtgaacaacgagaagcgtatgttgcaggagtccgtcgacgcgctctttgataatggtcgc
cgtggtcgtccggtcaccggtcctggcaaccgtccgctgaagtccttgagcgatttgctt
aagggcaagcagggtcgtttccgtcagaacttgctgggtaagcgtgtcgactactctggt
cgttccgttattatcgtcggtccacagctgaagctgcatgagtgcggtcttccaaagctc
atggctcttgagctcttcaagccgtttgttatgaagcgccttgtggaaaacgattacgcg
cagaacatcaagtcggctaagcgcatggttgagcgtcagcgccctgaggtgtgggacgtt
ctagaagaggcaatttctgagcatcctgtgatgcttaaccgtgcacctaccctgcaccgc
ctaggcatccaggccttcgagcctaagctcgttgagggtaaagctatccagctgcaccca
ctcgcgtgtgaggccttcaacgctgacttcgacggtgaccagatggctgtgcacttgccg
ctatctgctgaagcacaggccgaggcgcgcatcctcatgcttgcctccaacaacattctc
tccccggcatccggtaagccacttgccatgccgcgtctggacatggtgactggtctttat
tacctcaccatggacaagactgagggtgaaattggtggtcagggtgcataccagcctgct
actgaggatggtccagcaacgggtgtgtactcctcctacgctgaggcacttatggctcgc
gaccgtggcgttcttggcctgcaggccaagatccgggtacgcattagccatctgcgtccg
ccggtagaggttgaggcagagcagttcccagagggttgggagcagggacaaacctggttg
gctgataccactcttggccgcatcatgttcaacgagctcttgccgtggaactacccgtac
cttgagggcgttatggtccgtaagggtggaggatcgaacaagattctcttgggcgacgtg
attaatgatctcgctgcgacctatccaatgattactgttgctcagacgatggacaagatg
aaggacgccggtttctactgggcaacccgaagcggcgtgaccatcactatgtctgacgtg
ctcgttcttcctaataaggaagaaattcttgaccgctatgaggccgaggctgcaaagatc
gagcggaagtactgggagcagggtgctctgacagagcgcgagcgctacgaccgtctggtc
gagctttggaaggaggctaccgacgaggtcggtaatgccgtcgagaagctctatccggat
gacaacccgattcctatgatcgtgaagtccggtgctgccggtaacatgcgtcagatctgg
acgctggctggcatgaagggcatggttgtgaactcaaagggtgattacatcacccgaccg
attaagacctccttccgtgaaggcctgtcggttcttgagtacttcaacaactctcacggt
tcgcgtaagggcctcgccgataccgctctgcgtaccgccgactcgggttacctcactcgt
cgtctggtggacgttgcgcaggatgttatcgtccgcgaggatgactgcggcaccaagcag
ggcattcgtgtcccagtggccgttgaggttaaggatgctcagggcaacgtcaccggttac
accggacacagcctcatcgagacctctgttgctggccgcgtggcttccgttgacatcaag
gattccgagggcaacgttctggtaccagctggtgaaaacctcaccgatcagctcatcgag
aagctcatcgccgcaggcgttgccgaggtcaaggttcgctccgtgcttacctgccagacc
ccgaccggtgtgtgcgctaagtgctatggcaagtccatggctaccggcaagctcgttgat
atcggagaggcagtgggcatcgtcgctgctcagtccattggtgagcccggtacccagctg
acaatgcgtacgttccaccagggtggcgtcggtggtgacatcaccggtggtcttcctcgt
gtccaggagctcttcgaggctcgtgttcctaagaatcgcgctccgattgcttctgtggca
ggtaccgtacaccttgaggatgaaggtaacttctacaccctcaccatcaacccagacgat
gggtcagatgttgtggtctacgagaagctctccaagcgtcagggtcttgctaccgtgcgg
gttcctatggaatccaacccgggcgccatgatcgagcgcaccttgtcagaaggcgaccac
gtgaacgtgggcgaccgtctgctacgcggacctgctgatccgcacgacgtgcttgaggtt
cttggccgccgtggtgttgagcagcacctcgtggacgaggttcaggacgtgtaccgcgca
cagggtgtggctatccacgataagcacatcgagatcatcattcgtcagatgctgcgccgc
ggcaccgtcatcgagtccggcgcgacagagttccttccgggtactctcgttgacctttcg
gaggccaaggccgctaacgctgaggctattgctgctggtggacatcccgctgagctccgt
tcggagatcatgggtatcaccaaggcgtcgttggctaccgagtcgtggctgtccgctgcg
tccttccaggagaccacacgcgtgcttaccgacgccgccattaacaagcggtccgataag
ctgatcggcctcaaggagaacgtgatcatcggtaagctgatcccggcgggtaccggtatt
tcccgttaccgcaacatctccgtcaaaccgactgaggcagctcgcaatgcggcttactca
atcccaacgtatggagattccatctatggcgatggtctgcggcagcgtctgctggtgcta
aggcatccgacgcgatgtccgctaaaggcgttgagctcgtcgacccctatgtgcgtgcca
tgggcgaaggcaaagagatttcaccggcgcttccgtgccactggatga
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