Corynebacterium pseudotuberculosis PAT10: CpPAT10_1588
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Entry
CpPAT10_1588 CDS
T01879
Symbol
rne
Name
(GenBank) Ribonuclease E/G family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cpz
Corynebacterium pseudotuberculosis PAT10
Pathway
cpz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CpPAT10_1588 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpz03019
]
CpPAT10_1588 (rne)
03009 Ribosome biogenesis [BR:
cpz03009
]
CpPAT10_1588 (rne)
Enzymes [BR:
cpz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CpPAT10_1588 (rne)
Messenger RNA biogenesis [BR:
cpz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CpPAT10_1588 (rne)
Ribosome biogenesis [BR:
cpz03009
]
Prokaryotic type
rRNA processing factors
CpPAT10_1588 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
DnaJ_CXXCXGXG
AbiEi_1
Motif
Other DBs
NCBI-ProteinID:
AEK92914
LinkDB
All DBs
Position
complement(1732590..1735994)
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AA seq
1134 aa
AA seq
DB search
MAEETTKKVPARRATRKTATRKTAEDTATQDTVVPVDRDAIGDRIRVHALAKLASVSSRE
LIATLATLGLTKVAQSTLTREEALKLLDAHHIDSYSAEEKLRHRVEKNVENEIHQIEEKV
ERELNPDAEAAKLDDPEESEKLRRRIEKNVENEIHQIEEKVERELQDREAVREEDHQDSS
ENAVAEDTIVVIIEDEAAELLSDIEPEITPAPGLSAPAFPTPLFIAPTPAEELESNVDDS
VEDDEESAQSRRRRRGRRGTGRGKRTDSEDSFSEDLEESPNSEDAGEEKTEELITEPVGI
KGSTRLEAQRRRRAEMREESRNKRHIVSEAEFLARRESVKRTMIVRERERSDHPGVVTQV
GVLEDDLLVEHFVTSDTQSSMIGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWR
AAGLGGRGRRIEQALKSGDQVLVQVSKDPAGHKGARLTTQISFAGRYLVYVPNGRTAGIS
RKLPAPERTRLKNILKEVVPKDGGAIIRTAAENVSAEAIAADVNRLHKLWNQIQELTEKE
KNSKGAKPVTMYEEPNMLVKVVRDLFNEDFSELIVDGDRAWNTVHAYIQSVAPELQDRLI
KFDREAHEDRDAFEVHRVDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSG
GNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMALSENQDLVLRRLTEALGRDRT
RHQISEVTSLGLVQMTRKRLGTGLLETFATECEHCEGRGVIIHDDPVEQSVSDAAIEKSS
RARSGKAKAARKHGVAHQDPAQHPAAIAMQHHEEAGSAAGSNTSDASTADTSLAADTRTS
IDDLAAAVVIDDVELEKVVDSVASDVAEPGLLEPSKEKKGRRRRRGLRNSKRKDRGAADD
VMDIVDAALDRAFTEDPDEPSGADHLPLSGNKLSRSTTSVTYEEALAAFENSPRRKRAVR
GNSVSDHAPKPEDFKRIDVTEGAEEDTFASEASEETYSGSRRSRRVARKQGETRKAVENP
TQSEAADDTDSTGNVKIDSLRGRRRRAVRRRFQETNLAPSVVETAEEESTAKGRRRRRAV
RKTVVKAPRKAVIGEESSGVYVKDETVPETREASSAGRGRRRVARRVRTATKRN
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
gtggctgaagagaccacaaaaaaggtgcctgcgcgtcgggcgacacgaaagaccgcgacg
cgaaagaccgctgaggatactgctacgcaggatacggtggtgcctgttgatcgtgatgcg
atcggcgaccggattagggtgcatgcgctggctaaattagcgtcggtaagttcacgtgaa
ctcatcgctactcttgccacactagggcttactaaggttgcgcagtcgacgctgacccgc
gaagaagccctgaagctactcgacgcccaccacatcgacagctactcagccgaagaaaag
ctgcgccaccgggtggaaaagaatgtggaaaatgagatccaccagatcgaagaaaaagtc
gagcgtgagcttaaccctgatgctgaggccgccaagctcgatgatccggaggaatccgag
aagctgcgccgacgaatagaaaagaatgtggaaaatgagatccaccagatcgaagaaaaa
gtcgagcgtgaactgcaagaccgagaggcagtgcgcgaggaagaccaccaggattcttct
gaaaacgcagtagcagaagatacgatcgtagtaatcatcgaggacgaggcagcggagctt
ctttcagatatcgagccagagatcacgcccgctccgggactgtctgccccggctttcccc
acgccactgttcattgcgccgacgccagcggaagaactggaaagcaacgtcgatgactct
gttgaggatgatgaggagtcggcgcagtctcgtcgtcgccgccgcggtcgccgaggcacg
gggagaggaaagcgaactgattctgaggattccttctctgaggatctcgaggaatccccg
aacagtgaagacgctggtgaggaaaagaccgaggaactgatcaccgaaccggtagggatc
aaagggtctacgcgcctggaagcgcagcgtcgtcgtcgtgcggagatgcgagaagaatcg
cggaataaacggcatatcgtttcagaagcagaattcttggcgcgccgggaatctgtaaag
cgcaccatgattgtgcgggaacgcgagcggagtgatcatcctggagtagtgacccaggtg
ggcgttttagaagacgatctactagttgagcactttgttaccagcgatacgcagtcctca
atgatcggaaacatatatttgggacgcgtccaaaatgtgctgcccagcatggaggccgca
tttatcgatattggaaaaggccgcaatggcgttctctatgcgggcgaagtggactggcgt
gccgcaggcttaggaggccgggggcggcgtattgagcaggccctcaagtccggcgatcag
gtgcttgttcaggtatccaaagatcccgcaggccacaagggtgcgcggttgaccacccag
atttctttcgcagggcgttacctggtgtacgtgcctaacgggcgcaccgcgggtatttct
cgcaagcttcctgctccagagcggacgcgcttgaagaatatcctcaaagaggttgtgcct
aaagacggcggagctatcatccgtaccgctgcggaaaatgtctctgcggaggctatcgct
gcggacgtgaatcggttgcacaagctgtggaatcagattcaagagctcacggagaaggag
aaaaactccaagggtgctaagcctgtcaccatgtatgaagagcccaacatgttggtgaag
gtggtgcgtgatcttttcaacgaggacttctcggagctaattgtcgacggcgaccgtgct
tggaataccgttcacgcctatatccagtcagtagctcctgagctacaggatcgcctgatt
aagtttgatcgggaagcccacgaggatcgcgatgcgtttgaagtgcaccgcgtagatgaa
cagctgcacaaggccttgtcgcggaaagtgtggcttccctctggcggaaccttagtgatc
gaccgtacagaagctatgacagtcattgacgtgaacaccgggaagttcacgggttctggc
ggcaatcttgaagaaacggtaactcgtaataaccttgaggctgcagaagaaatcgttaga
cagatgcggttgcgcgatcttggcggcatgatcgtggtggacttcattgacatggccctt
tcagaaaaccaggatctagtgttgcgtcgactcaccgaggcactaggccgtgaccggacg
cgtcaccagatttctgaggtgacgtcgttaggcctggtgcaaatgactcgaaagcgtctt
ggcacgggcttgctagagacttttgccaccgaatgcgagcattgcgagggccgtggagtc
atcattcacgatgaccccgtggaacaaagcgtttcggatgccgctattgagaagtcctcg
cgcgcacgttccggaaaggctaaggcagctcgaaaacatggggttgctcatcaagatccg
gcgcagcatcctgctgctatagcaatgcagcatcatgaggaggctggctctgccgctggt
tccaatacctctgacgccagcactgctgacaccagccttgctgctgatactcgaaccagc
attgatgatcttgccgcagctgtggtgatcgatgacgtagagcttgagaaggtcgtggac
tccgtggcgagtgacgttgcggaacctggtttgctggagccatccaaggagaagaagggg
cgcagaaggcgtcgcggcttgcgcaattctaagcgaaaggacaggggagcagcggacgat
gttatggacatcgtcgacgcggctttggaccgagcttttacagaagatccagacgagccc
tcaggtgccgatcatctgccgctatcgggtaataagctcagccgcagcactacttctgtg
acctacgaggaagcgctggcagcgtttgagaattctccgcgtagaaaacgtgcggtgcgt
ggaaactccgtatcggatcatgcgccaaaaccggaggattttaagcgtatcgacgtcacc
gagggcgccgaagaagacacgtttgcaagcgaagcttctgaggagacctattcaggtagc
cgccgctcacgccgcgtggccaggaaacagggagaaacgcggaaggccgtggagaaccca
acgcaatcagaggctgcggacgataccgactcgacgggtaatgtgaagatagattctcta
cgcgggaggcgccggcgtgccgtgcgcaggaggttccaagaaacaaatcttgctccatca
gtcgttgagactgcggaagaagaatcgacggcgaagggtcgacgccgtcggcgtgccgtg
cgtaaaaccgtggtgaaagcgccccgtaaggctgttatcggtgaggaatcttccggtgtg
tacgtgaaagatgagacggtgccggaaacgcgcgaggcatcatctgcgggccgagggcgg
cgacgcgtggcgcgtcgggtgcgcacggcgacaaagagaaactaa
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