Cherax quadricarinatus (Australian red claw crayfish): 128685375
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Entry
128685375 CDS
T09502
Name
(RefSeq) collagen alpha-1(XV) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cqd04147
]
128685375
00535 Proteoglycans [BR:
cqd00535
]
128685375
00536 Glycosaminoglycan binding proteins [BR:
cqd00536
]
128685375
Exosome [BR:
cqd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
128685375
Proteoglycans [BR:
cqd00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
128685375
Glycosaminoglycan binding proteins [BR:
cqd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
128685375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Motif
Other DBs
NCBI-GeneID:
128685375
NCBI-ProteinID:
XP_069938921
LinkDB
All DBs
Position
8:6975830..7812375
Genome browser
AA seq
1554 aa
AA seq
DB search
MFLFAVTNPLENLIQLGVSLTPGGPGATNLSLYYTDGDRHMTSQAIASFLVPQFTGSWTR
LSLKVTEEEVQLWFNCQVYNSVLVRRVPLQLVFDSASTLYIGQAGGIFKGEFEGALQELK
IYNMPDMAKVQCDNNFAYFGSGSGDGRSDVPIMEDYFSLDMEDDDDSSVPSLEGSGVQLA
GAPPPLPPPPPLNGSKRRKVCTTDHCQDVGVWACSTVEWTQAIFPNLLGQGPREAEPIAS
QFWHQIHTINCSHEFRFVVCGLLAPPCAPGLTKPLPPCREVCDSAINQCLQIMEKYYLRW
PEDTFTCRELPYSHQQPCLRYHQGQVVFPPGVSTDCSIQDYNYNYNYDYDSYDQLPALTL
HEDYVLVGSGEEPDDDLGFVSSRELETYDENYELFDIPPFTNTTITSPTPSTTTAITSTS
TSTTRTTTFTSTDTPTTTTGTLTNSITTTDSSAVPPGPTTSLTLPSNPPGFSAANPNPTD
SLTVLPNPVSLSTDHPNPISSTVLPNPTVSTAHPNPTDITTIKIRFAPAPTPSTALPTRQ
PATSTDHGISYLHRSEIINEDFSLPGEKGEKGERGPRGPPGESVAGPPGPPGPPGPPGVS
GSSLSKVSSLSLPDLGSGASEDFIPEPEFSGGRRGPPGPRGECLCNETRLVASVIAQIPR
GLPGPEGKAGRDGLPGIPGTPGRPGPPGERGVHGEKGDKGDRGHPGSRGFEGVQGTKGES
GLDGAPGVPGERGPQGPPGQPGWGNSGYDPMWKPRSMFKVDGGMAMAPARPGTPGSPGEK
GEPGAAGIRGPRGYPGSKGEKGSPGSDGDKGERGAVGKRGVMGPKGEPGTPGINGAPGPP
GLTSDPGAKGEKGERGEPGMGLPGPPGPPGGLSEKDRKIILEQVVETLENKNGVNGHSGS
GINIWDTSGGLPWNGVSDDEDLYHGEGSGGLAYNPYHPKEGRGLQGPPGLPGPPGLQGIQ
GIKGIQGIKGSSGDIGPPGQPGLDGLPGRKGTKGEPGNPGAKGEVGPLGSQGQKGDRGDA
GPPGPVSFLVQPDGTNITVVKGDKGDRGRRGKRGKQGPPGPAGSLGDLGLPGWPNVTEIG
APGSPGKPGPPGSPGIGQKGEPGPPGPPGPPSGSFLNGILGSSSSDIAGTPSAGGPVSVA
LPGPPGPPGPVGSPGPPGPPGPPGSSQTNDNLMFIPVPGPPGPPGPPGTPGIPGVSMEGP
QGPRGSTGSPGHGLPGDPGPPGPPGQPGYGQRGPPGMPGPPGKDGEQLAGPPTSIVPGSV
TFPDKASMLKMSEMSPVGTLAFILDEEVMLVRIGAGWQYIAMGSVVPLPTTTPAPPTTST
SQNPAAHLPPLQVDSLVNAVDGPRQGQLTKLRLAALNQPFSGDMHGVRGADYACYRQARR
AGLKGTFRAFLTSRVQNLDSIVRYSDRDLPVVNIKGEVLFNTWRGIFSGSGGIFSQKPRV
FSFDGKDVLSSPVWPQKYVWHGSDLLGERALSSYCDAWNSDSQYVIGLASSLLKNRLLAQ
ERFGCHNSFIVLCIEATSQARYRRKRHAGTQEPELTEDEFNDLLNSLDLVEGDV
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcttcgcagtgaccaacccgctggagaacctcatccagctgggggtttccctc
actcccggtgggccaggagccactaatctttctctctactacactgacggagacagacac
atgacctcacaagccatagcttccttcctcgtgccccagttcaccggatcctggaccagg
ttgtcgttgaaagtgacggaagaggaggtgcagctgtggttcaactgtcaggtgtacaac
agtgtgttagtcagacgggtccccttacagctggtgtttgactcagcctccacactctac
atcggccaggcaggaggcatcttcaagggagaatttgagggggcgctgcaggagctcaaa
atctacaacatgcccgacatggcgaaggtgcagtgcgacaacaacttcgcgtattttggt
tctggctctggcgatggtcgcagcgatgtgcctatcatggaagactatttctcgctggat
atggaagatgacgatgactcgtcggtgcccagcctggagggttctggtgtccagctggca
ggggcaccgccccccctacccccgccaccccccttaaacggatccaagcgacggaaagta
tgcaccacagatcactgtcaggacgtgggcgtgtgggcgtgcagcaccgtggagtggacg
caggccatctttcctaatttattgggtcagggtccacgagaagcggaacccatcgcctct
cagttctggcatcaaatccacaccatcaactgcagtcacgagttccgctttgtggtatgt
gggttgctggctcccccttgtgccccaggcctcaccaagccgctaccaccttgtagggag
gtctgcgattctgcaataaaccagtgtctacaaatcatggaaaagtattacctgaggtgg
cctgaagacacgttcacctgccgggaactgccttacagccatcagcagccctgcctcagg
taccaccaaggtcaagtggttttccctccaggggtcagcaccgactgctccattcaagat
tataactacaactacaactacgactatgatagctacgatcagctgcctgcactcaccctc
cacgaggactacgttttagttgggtcgggagaggaacctgacgatgacctgggcttcgtc
tcctcgagagaactcgaaacctacgacgagaactatgagttgttcgatataccgcctttc
acaaacaccactatcacctccccaacaccctcaaccaccacagccattacatccacatcc
acatccaccaccagaaccactacattcacctccacagacactcccaccaccactacaggg
acgttaactaactccattactacaacagattcctcagcagttccacctggtcccacaact
tccctgacactcccttctaatcctccaggcttttcagcagccaatcctaaccctacagac
tctttaacagtgcttcctaatcctgtatccttatcgactgaccatcctaaccccatatct
tcaacagtccttcctaaccccacagtctcaacagcccatcctaatcccacagacattacc
accataaagattaggtttgctcctgccccaacccctagcacagcccttcctacgcgtcaa
ccagcgacatccaccgatcatggcattagttatctccataggagtgagataatcaatgag
gacttcagtcttcctggagagaaaggcgagaagggggagagagggcccaggggacctcct
ggtgagtctgtggcaggaccccctggacctccaggacccccaggacccccaggtgtctct
ggttcctccctctccaaggtctccagcctctccctgcctgacctgggatcaggagccagt
gaggacttcattcctgagccagagttcagtggtgggcggagaggtcctcctggtccccgt
ggtgagtgtctctgcaatgaaacacgtctggtggcttctgttatagcacagataccacga
gggctaccgggacctgaaggaaaagcaggccgagatggcttgccagggatcccaggaaca
ccaggacgacctggaccaccaggagagcgcggtgtccacggggaaaaaggagacaagggt
gaccgagggcatcctggtagtcgtggttttgagggggtgcagggaaccaagggcgagtct
ggacttgacggagccccaggagtgccaggggagaggggaccacagggtcctccaggacaa
cctggttggggcaactctggctatgatccaatgtggaagcctcggtcgatgttcaaggtt
gatggaggtatggccatggcacctgccagaccaggcaccccaggctccccaggagagaag
ggtgagcctggagcagcgggtataaggggaccccgtggataccctggatctaaaggagag
aagggcagccctggcagtgatggggataagggagaaaggggagctgttgggaagcgaggt
gtgatgggtcccaagggtgaaccaggcaccccaggcataaatggtgccccagggccccca
gggcttacatctgatccaggagccaagggtgagaaaggtgagcgtggggaacctgggatg
ggccttcctggtcctcctggtcctccaggaggactctcagagaaggaccgcaaaatcatc
ttggaacaggtggtggagaccctggagaataagaatggtgtcaacggtcattcaggaagt
ggcatcaatatctgggacaccagcggtggtctcccatggaatggagtcagtgatgatgaa
gatctctaccatggtgaaggctccggaggtctggcgtacaacccataccaccctaaagag
ggtcgaggtcttcagggacctcctggtctcccaggccctccaggtctacagggaatccaa
ggcatcaaggggatccagggcatcaagggtagctctggagacattggcccgccaggacag
ccgggtctggatggtcttcctggacgtaagggaacaaagggagaaccaggaaatccaggc
gccaagggagaagtgggacctctcggatcccaagggcaaaaaggtgacaggggtgatgca
ggtccccccggcccagtcagctttctggttcaacctgatggaaccaacatcacggtagtc
aagggtgataaaggcgaccgtgggagaagaggcaagcgaggcaagcagggcccccctggc
ccagcagggtcccttggggatcttggtctcccaggatggccgaatgtgacggaaattggc
gccccaggctccccgggtaaaccaggacctccaggatccccaggaattggccagaaagga
gaacctggacctcctggaccccctggacctccaagtggcagctttttaaatggaattttg
ggcagcagtagctctgacattgctggcacaccatctgctggtggccctgtgtcagtggcc
ctacctggaccaccaggtcccccaggtccagttggatcacctggacctccaggaccccct
gggccacctggaagctctcaaacaaatgacaatctgatgttcatcccagtacctggaccg
cctggacctccaggtccaccgggaactcctggcataccaggcgtatccatggaaggaccc
caaggaccacgcggatctactgggtcacctggtcatggtcttcctggcgatccaggacca
ccaggaccaccaggtcagccaggttatggccagagaggtccccctggtatgccaggtcct
cctggtaaggatggggaacagttggcaggtccacccaccagcatagtacctggttcagtc
accttcccagacaaggcttctatgctgaagatgagtgaaatgtcacctgtaggtaccctg
gccttcatactagatgaggaggtaatgttggtgcggattggggctggctggcagtatatt
gctatgggctccgtggtaccactgcctactaccaccccagcgccacccaccacttctacc
tcccagaatcctgcagcacacctcccgccactccaggtggattcactcgtcaatgctgtg
gatggacccaggcagggacagctcaccaagcttcgactagcagccctgaaccagcccttc
agtggagacatgcatggagttaggggtgctgactatgcttgttacagacaggctcgaaga
gcagggctcaagggcaccttcagggctttcctgacgtctagggtacaaaacctcgactcg
attgtaaggtactctgaccgggaccttcctgttgttaatattaagggagaggttctcttc
aacacatggcgtggcattttctctggctctggaggcatcttttcccagaaacctcgtgtg
ttcagctttgatggaaaggatgtattatccagccctgtttggcctcaaaaatatgtgtgg
cacgggtcggacctgttgggagagcgggcactctcctcctactgtgacgcgtggaacagc
gactctcagtatgtgataggacttgcctcttccttgttgaagaaccgcctgctggctcag
gaacggtttggctgccacaactctttcattgtcctctgtattgaagccacaagccaggct
cgctacagacggaagcgacatgctggtacccaggaaccagagttaactgaagatgagttc
aatgacctcctcaactctctggacttggtagagggagatgtttaa
DBGET
integrated database retrieval system
