Cherax quadricarinatus (Australian red claw crayfish): 128685482
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Entry
128685482 CDS
T09502
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd03013
Nucleocytoplasmic transport
cqd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128685482 (Upf1)
03015 mRNA surveillance pathway
128685482 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqd03019
]
128685482 (Upf1)
Enzymes [BR:
cqd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
128685482 (Upf1)
5.6.2.5 RNA 5'-3' helicase
128685482 (Upf1)
Messenger RNA biogenesis [BR:
cqd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128685482 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
128685482 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
ATPase
NPHP3_N
AAA_16
AAA_22
nSTAND3
SRP54
AAA_32
Herpes_ori_bp
AAA_7
PhoH
Motif
Other DBs
NCBI-GeneID:
128685482
NCBI-ProteinID:
XP_053628015
LinkDB
All DBs
Position
8:32023757..32192185
Genome browser
AA seq
1120 aa
AA seq
DB search
MSVDAYGPSSQSLTFYDTEEADLLGADTQGSEYEFNLTLGSQTQTQGDPLDKTQPTQSQV
TVNGDVGEPEVEKATEALADLQFEEEDEENAFYTKELPEWACRYCGIHDPASAVMCNVCH
KWFCNGRGNTSGSHIINHLVRAKHKEVSLHKDGLVRDTVLECYACAVKNVFVLGFIPAKA
ESVVVLLCRQPCAAQSSLRDMNWDPEQWKPLINDRALLPWLVRVPSEAEQLRARQITAQQ
INKLEELWKENASATFDDLERPGVDEEPQQVCLRYEDGFQYQNIFGPLVKLEADYDKKLK
ESQTQDKIEVRWDIGLNKKICAYFTLAKTDGDMRLMHGDELRLRYLGDLHKPWSGVGHVI
KIPDNFGEEVGIELKSNVGVPTDCRDKFVVDFVWKSTSFDRMQAALRKFAVDDSSVSPYI
YHRLLGHVEVDELIFRHIHLPKQLSAPNLPTLNNSQQYALKHALQRPLSLIQGPPGTGKT
VTSATIVYQLVKQTGGSVLVCAPSNTAVDQLTEKIHKTGLKVVRLCAKSREAIDSPVSFL
ALHNQIRSLEDNGELQKLQQLKEETGELSSADEKRYRMLKKQAEKTLLEAADVICCTCVG
AGDPRLARLKFHSILIDESMQATEPECMVPVVLGAKQVILVGDHCQLGPVVMCKKASRAG
LSQSLFERLVVLGIRPFRLTVQYRMHPQLAQFPSNFFYEGSLQNGVADADRTMKGVSFPW
PQADKPQFFYVTAGQEEIAGSGTSYLNRTEASSVEKLVTRFLNSGVKPEQIGVITPYEGQ
RAYLVQYMQYQGPLNQKLYQRLEVASVDAFQGREKDFIIMSCVRSNEHQGIGFLSDPRRL
NVALTRARYGIIIVGNPKVLSKQGLWNHLLHHFKEKKVLVEGPLNNLKESMMQFSKPKRL
INATNPGSHFMNTAMYDAREAMIPGSMYDRSGPINGSAPAASPYFRGPQFDMYGRAHDSL
DYIKAEHNQPGLNNLPVPVGMFMNMAHIPPRFYQQHQQALAQARGGRGGARGGRAGSRKL
GKNMGGASALQLSQPFSQDPSMQSYSQPGLTQGHLSQGMSGPGLSGFSQGLSQAELSQDS
YMVDQFQSQTDGLLSQDSTYQGDRAFFTPASQTHHFSQPY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcatacggccccagctcccagagtcttaccttctatgacaccgaggaa
gctgaccttttaggggctgacactcagggctctgagtacgagttcaatctcacgctgggt
agccagacccagacacaaggagacccgctagacaagacccagcctacccagagccaggtg
acggtgaatggcgatgtgggggagcccgaagttgaaaaggcaacagaagcacttgccgat
ttgcagtttgaggaagaggatgaagaaaatgcattctatacgaaggaacttccagagtgg
gcatgccgctattgtgggatccatgatccggcatctgccgtcatgtgcaatgtttgccac
aagtggttctgtaatggccgtggaaacacctctggctcgcatatcatcaaccatcttgtt
cgtgctaagcacaaggaagtgagccttcacaaagatggactcgtgcgagatactgttttg
gagtgctatgcttgtgctgtcaaaaatgtgtttgtgcttggctttatccctgccaaagca
gaatctgtggttgttcttttatgtcgacaaccatgtgctgcacagagttctctcagagat
atgaattgggatccagaacagtggaaacctttgatcaatgatagagctcttttgccatgg
cttgtgcgtgtgccttctgaagctgagcaactccgtgcacgtcagataactgcccagcaa
attaataagttggaagaactctggaaggagaatgcttcagcaacatttgatgacctagag
cgtccaggtgtggacgaggagcctcagcaggtttgcttaagatatgaggatggcttccaa
taccagaacatttttggacctttggtaaagttagaggctgactacgataaaaaattaaaa
gaatcccagacccaggacaagattgaagtgaggtgggatattgggctaaataagaagatt
tgtgcctatttcactcttgccaaaactgatggagatatgcggctgatgcatggtgatgag
ttacgccttaggtacttgggtgaccttcacaaaccctggtctggggttggacatgtcatc
aagatccctgacaattttggggaagaagtggggattgagttgaagtccaatgtgggtgtt
cccacagattgtcgagataaatttgtagtggactttgtatggaaatcaacaagctttgat
aggatgcaagcagctttaagaaaatttgctgtagatgactcgtctgtgtctccatatatc
taccaccgactgttgggtcatgtagaggtggatgagcttatattccgtcatattcatctc
ccaaaacagctgtcggctccaaacttgcccaccttgaacaattctcagcaatatgccttg
aagcatgccttgcaacgacctttgtcattaatccaaggcccaccaggcactggcaagaca
gtgacttcagccaccattgtgtaccaattggtaaagcagactggtggctccgtcctggtg
tgtgcaccttccaacacagctgttgaccagctcacagagaaaattcataagactggactt
aaggttgtacgcttgtgtgccaaatcccgggaagctattgattctccagtttcattcttg
gccttacataaccaaatccgtagtcttgaggacaatggcgagcttcagaagctgcagcaa
ctcaaggaagagacgggagagctgtcatcagctgatgagaagcgttaccgcatgttgaag
aagcaggcagaaaaaacattgctggaagctgctgacgtcatttgctgcacttgtgtcggt
gctggtgatccccggctggcccgccttaaattccactccatattgattgacgagtccatg
caggccactgaacctgagtgcatggttccggttgttcttggggccaaacaagttatcctt
gtaggggaccactgtcagttgggtccagttgtaatgtgtaagaaggcctcaagggctggc
ctctcccaatctctttttgaaaggctggttgttttgggcatacggccatttcgcctcacc
gtccagtaccgtatgcaccctcaactggcacagtttccttccaactttttctatgagggg
tcccttcagaatggtgttgctgatgctgatcgtacaatgaaaggtgtaagttttccctgg
ccccaagcagacaaacctcagttcttctatgttacagctggtcaagaagaaatagctggg
tcgggtacttcttacttaaaccgaacagaggcatccagtgtggaaaaattagtaacacgc
ttccttaattctggtgtgaagccagagcagattggtgttattacgccttatgaaggccag
agagcttacctggttcagtacatgcagtatcaagggcctttaaaccagaagttgtaccag
cggttagaggttgcaagtgtggacgcttttcaaggacgggagaaggacttcatcatcatg
tcatgtgtgcggtccaatgaacatcagggaattgggtttctgtcggaccctagaaggctt
aatgtggccctcactcgagctcgttatggcatcattattgtgggcaatcccaaagttctc
tcaaagcaaggcttgtggaatcatctactacatcatttcaaagaaaagaaggttttggtg
gaaggtccactaaacaatcttaaggaatctatgatgcagttcagcaaacctaaaagacta
ataaatgctaccaacccaggttctcatttcatgaatactgctatgtatgatgcacgagaa
gctatgataccaggttccatgtatgatcgctctggtcctatcaatggctctgcacctgca
gcctcaccatattttagaggtcctcagtttgacatgtatgggcgtgcacatgattcccta
gattatatcaaggctgaacataaccagcctggcctcaacaacttaccagtaccagtgggg
atgttcatgaatatggcacacatcccaccacgattttaccaacaacaccaacaggcactt
gcacaagcacgaggtggtcgaggtggtgcacgtggaggcagagctggatcaagaaaactt
ggcaagaacatgggtggggcaagtgctcttcagctctcacagcctttcagtcaagaccct
tcaatgcagagctattctcagcctggcctcacacaggggcacttgtcacagggtatgtct
ggacctggcctgagtggtttctctcaaggattgtcacaggcagaattgtctcaagattcc
tatatggtagaccagttccaaagccagacagatggtctcctctcccaagactctacttac
cagggtgaccgtgcgttctttacaccagcatcacaaacgcaccatttctcacagccgtac
tga
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