Cherax quadricarinatus (Australian red claw crayfish): 128689961
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Entry
128689961 CDS
T09502
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128689961 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqd03019
]
128689961 (Mtr4)
03041 Spliceosome [BR:
cqd03041
]
128689961 (Mtr4)
03009 Ribosome biogenesis [BR:
cqd03009
]
128689961 (Mtr4)
03016 Transfer RNA biogenesis [BR:
cqd03016
]
128689961 (Mtr4)
Enzymes [BR:
cqd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128689961 (Mtr4)
Messenger RNA biogenesis [BR:
cqd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
128689961 (Mtr4)
Spliceosome [BR:
cqd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
128689961 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
128689961 (Mtr4)
Ribosome biogenesis [BR:
cqd03009
]
Eukaryotic type
Pre-60S particles
Helicases
128689961 (Mtr4)
Transfer RNA biogenesis [BR:
cqd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
128689961 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
ATPase_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
128689961
NCBI-ProteinID:
XP_069944656
LinkDB
All DBs
Position
25:2525720..2569531
Genome browser
AA seq
1022 aa
AA seq
DB search
MACFDDDLFDFVDEDDNQQIEALPDIEVLDEDENEKATEELKQLLKKRAAESDSKIKGTV
VKKRRSQIETTQSELRLIEDLPRIAVHIIETFEACTHEVAVPPGEMYVPLQPPKEKPAKS
YQFILDPFQKEAILCIDNNQSVLVSAHTSAGKTVVAEYSIAMCLQNKQRVIYTTPIKALS
NQKYRDFSDEFTDVGLLTGDVTINPNASCLIMTTEILRSMLYRGSEVTREAGWVIFDEIH
YMRDKERGYVWEETIILLPPTVHFVFLSATIPNASQFAQWVCYLHHQPCHVVYTDYRPTP
LQHYIFPAGGEGIYLAVDETGKFREDNFNTAMTVLQNAPEQSSLRGKKGGVKDSSDCYKL
VKMIMERNFAPVIIFSFSKKECEAYALQMSKLDFNLAEEKLLVDEVFNNAIAVLSEEDRQ
LPQVVSVLPLLRRGIGIHHGGLLPIIKETIEILFGEGLVKALFATETFAMGLNMPARTVL
FTNVRKFDGQDFRWLTSGEYIQMSGRAGRRGKDDKGIVIMMVDEKLNTSVVKNLVQGKAD
PINSAFHLTYNMVLNLLRVEQINPEYILERSFFQFQNYSSIPSLCERVRSCEKALESVTV
PREGEVESYYKIKQTIHNLKNERHAFITRPIYIMPFLQPGRLVYVKNNEDDFGWGVVLSY
KKQEDKKNPMEAPIITVDVILRVSEATATSKVTSDLKPPKAGEKSEPVVMSVMLKLIHEV
SAVRLKLPSDLKPLDQRVMVMKMVQEALKRVPENQFLLDPVKNMKIKDDIFLEIVNKLEK
FKVRLESHKLHRDPDREALYEKFSKKMDLKKELGIAEVDLKRAKSLLQMDELKCRKRVLR
RLGYATSQDVIERKGRVACELSAADELLITEMLFNGLFNNLTAAQTCAILSTFVCDEKSS
EMPKLGEELSGPLRQMQDMARRIARVSHECKLEIDEENYVEQFRPFLMDVVYEWCNGSSF
MDLCTKTDIYEGSIIRAMRRLEELLRQMIQAAKAIGIDLENKFSEGVKLLKRDIVFAASL
YL
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggcgtgcttcgatgatgatttatttgacttcgtggacgaggacgacaatcagcagatt
gaagccttgccagacatcgaggtcctcgacgaggatgagaacgagaaagctactgaggaa
ctcaaacagttattaaaaaaacgagcagctgaaagtgacagcaagatcaaaggaacagtt
gtaaagaagcgccgctcacaaattgagacaacacagtctgagctgagattaatagaggat
ttaccaagaatagcagtccacataatagaaacttttgaagcatgtacacacgaagtggct
gtacccccaggagaaatgtatgttccacttcagccccccaaagagaagccagcaaagtca
taccaatttattttggaccctttccaaaaagaagccatattgtgtattgataataatcaa
tcagtgttggtgtctgctcacacatcagccggtaaaactgtagttgctgaatattcgatt
gccatgtgtttacagaacaagcagagagtaatctataccacacccatcaaggctttgagc
aatcagaagtacagagatttcagtgatgagtttactgatgtgggtttgttaactggggat
gtcactatcaatccaaatgcctcttgcctcatcatgaccacagaaattttacggtcaatg
ctttatcgaggctcagaagtaacacgagaagctggttgggttatatttgatgagatacac
tacatgagagacaaagaaagaggatacgtttgggaagaaaccattatccttctgcctcct
acggttcactttgtctttctttctgcaactattcctaatgcaagtcagtttgcccagtgg
gtgtgttatcttcaccatcagccatgtcatgtggtctacacagattaccgacccactccc
ctccaacattatatcttcccagccgggggtgaaggaatctacctagctgttgatgaaact
ggcaagttcagagaagataatttcaatactgctatgactgttttgcagaatgctcctgaa
cagtcaagcttacgaggaaagaaaggtggggtcaaggatagttccgattgctataaactt
gtaaaaatgatcatggagcgcaactttgcaccagttatcatcttcagtttctcaaaaaag
gaatgtgaagcgtatgctctccaaatgtccaagcttgatttcaatttagcagaagagaaa
ttgttggtggatgaagtgttcaacaatgcaatagcagtcctctctgaggaggatagacag
ttaccacaggtggtttcagttctacccttgttaagacgagggataggcattcatcatgga
ggcttactacctattatcaaggagacgatagagattctctttggcgagggtttggtgaag
gccctgtttgccaccgaaacatttgccatgggtctcaatatgcctgccagaactgtactc
ttcactaatgtacgcaagtttgatggacaggatttccgttggctaacttcaggagaatac
atccagatgtctggccgtgcaggtcgacgaggaaaggacgacaagggtattgttataatg
atggttgatgagaagcttaatacttcagttgtaaagaatttggtgcaaggcaaagctgat
cccatcaattctgccttccacctgacatataacatggtgctgaacttgttacgtgtggag
cagataaaccctgaatatatcctggagaggtcatttttccagttccaaaactattcatct
attccatcactttgtgagcgtgtgaggagttgtgaaaaggcattggaatctgtgactgta
ccacgagagggtgaggtggagagttattacaagattaaacagactatacataacctgaag
aatgagcggcatgctttcattacacgacctatatacatcatgccattcctacaaccagga
aggttggtctatgttaagaataatgaagatgattttggctggggtgtagtgcttagctat
aagaaacaagaagacaaaaagaatccgatggaggctccaataataactgtagatgttata
ttacgtgtatcagaggcaacagctacttcaaaggtgacttcagatttaaaacctcctaaa
gcaggtgagaagagtgagccggtggtgatgtcagtcatgttgaagttgattcatgaagtg
tcagcagttaggctcaaactacccagtgacctcaaacctctggatcagcgtgtcatggtc
atgaagatggttcaggaagctctgaagagagttccagaaaaccagttcctattagaccca
gtgaagaacatgaagataaaggatgatatatttttggagattgttaacaaacttgagaaa
tttaaggtccgactcgagtcgcacaaactacatagggacccggaccgagaagcactttat
gaaaagttttccaagaaaatggatttgaagaaggaactgggcattgctgaagtagacctt
aaaagagctaagtctctcttgcaaatggatgagctcaagtgtcgaaagcgtgtcctccgt
cgcttgggttatgccacttctcaggatgtgattgaacgtaaaggtcgagtagcttgcgaa
ttgtcagcagcagatgaactcttgataacggagatgcttttcaatggtcttttcaataat
ttaacagctgcccagacgtgtgctatacttagtacatttgtctgcgatgaaaagagttct
gagatgccaaagcttggagaagagttatcggggccattaaggcaaatgcaggacatggct
cgaagaattgcccgtgttagccatgagtgtaaactagagattgacgaagaaaattatgtt
gagcagtttaggccattcctgatggatgttgtatacgaatggtgcaatggttcctcattc
atggacctttgcaccaaaaccgatatctatgagggaagtatcattcgagctatgcgtcgt
ctagaggaactcctgcgtcagatgattcaagctgccaaggccattggcattgacctagaa
aataagttctctgaaggtgtcaaactactaaagagagatattgtatttgcagcaagtctt
tacctatag
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integrated database retrieval system
