KEGG   Cherax quadricarinatus (Australian red claw crayfish): 128693417
Entry
128693417         CDS       T09502                                 
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
  KO
K19719  collagen type II alpha
Organism
cqd  Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd04512  ECM-receptor interaction
cqd04518  Integrin signaling
Brite
KEGG Orthology (KO) [BR:cqd00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    128693417
   04518 Integrin signaling
    128693417
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:cqd00536]
    128693417
Glycosaminoglycan binding proteins [BR:cqd00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   128693417
SSDB
Motif
Pfam: Collagen COLFI New_glue
Other DBs
NCBI-GeneID: 128693417
NCBI-ProteinID: XP_069953513
LinkDB
Position
57
AA seq 1607 aa
MGTSVRWGPGFSTEWLSAAGTRLRRHTPAAPPHPPRRRRRVADAADAERPTMWRLPAAAR
RPPQLPSLLLLLLLFSAAAPWAAAEPDPKPKPQEDYYDGGYDNYEDYAEYTYEDNDYPDG
TTDEVAVTDDSPPYEAPDAIITEAPFEAYDPYDYTEPPTTTTTTTTTTTTTRPPTTTTTT
TTTTPPPTTTTTTTTPPPPPPTVGYERQPTRGRRPSRRRQGERRPQVVPDPEGMITEEPP
TDIVGPTAPDTGYGASTTGAEGPSGPPGDRGPTGTPGSPGTPGQPGPPGPMPDISPWLTQ
LSQSQGGEKGPQPDPFSYLQSQVGPVGPRGSPGAPGPSGPQGFQGMRGEPGDPGPIGPSG
PPGPRGMPGIPGKDGENGEDGSAGPPGSAGPPGPRGLPGMPGLPGVKGHRGFSGLDGAKG
EQGQMGDKGAAGPGGPPGPIGPMGSAGPRGERGREGPPGPPGLRGIDGIAGPPGPPGPPG
KSGPPGFPGSAGAKGDQGVQGSKGSQGLQGPRGEAGKPGAPGETGPQGSSGKDGLPGEKG
APGSQGDSGPPGFPGARGPPGLPGSPGMPGNKGERGLGGERGFKGELGMKGEGGTPGPRG
LPGAPGSPGKRGKRGIRGPPGGVGPQGERGPTGGRGLPGADGPPGPKGQSGDPGPTGTVG
QKGRGGDPGPPGLPGRQGLRGPTGLSGPSGKTGRPGDRGPPGADGKPGDQGPQGIQGLPG
PMGPPGPIGPIGEAGKDGNPGETGATGPRGDPGKDGAQGPPGIAGPTGAPGERGPPGSPG
ARGFQGLPGSPGISGANGKDGEAGLQGPRGLPGGAGLRGQRGFPGERGAQGPPGETGKRG
ESGQAGPDGPAGPSGPPGQKGHSGPSGLVGLPGGRGPSGLPGEKGERGALGRVGPEGPPG
RQGDQGPQGIMGPVGPPGEPAEKGDPGPPGPPGEPGANGMTGDRGQQGEQGLQGFPGPIG
PPGSAGPKGQRGLPGQKGAQGNPGLVGQPGEPGPQGLAGLTGAKGQRGELGQRGEPGLMG
PPGRPGNAGTPGTPGDQGPPGPSGNPGIKGTPGDTGRPGLPGPTGQPGAPGAEGPKGEAG
PEGRPGAIGQPGPVGPSGERGLPGLPGPPGPPGLRGKTGERGEPGSEGKRGDEGPIGPPG
LTGAVGPIGPTGDTGAPGADGKPGPPGIAGRTGDKGPPGTPGPQGGSGPTGLPGPPGPAG
PIGPTGERGDRGEVGPQGVEGSSGPRGKPGAPGSQGETGEPGAVGPKGAKGHRGLIGLQG
LPGPQGPSGDKGVPGVAGPPGPSGEPGPKGPPGRDGGIGPQGIMGPPGPRGPSGEEGKSG
QPGSPGPAGPPGPPGESMGYDAAALAALLGQGQAKGPDPLQGDDSELPPRLFGKEITDDE
RRDLITKAYEQLKTSFKKFLRPEGSKDSPAKTCRDLAYTHPELPSGEYWVDPNEGDVKDA
IVVHCDMEKKATCILPQPDMTQEFTWRGQPRGIVWLGEDIKPGFEFTYKADSNQMQFLQL
LSSEATQQLTYHCKNSVAVFDSHRRNLRNALQIMTVSDTELKARGNRKFKYRVIEDGCKA
RLPTWASTKIEYRTEKPQRLPFVDIGVRDVGEPNQSFKIELGPVCYA
NT seq 4824 nt   +upstreamnt  +downstreamnt
atgggcacctcagtgcggtgggggcctgggttcagtacagagtggttgtctgccgcgggc
acacggctccgacggcacaccccagcagcccccccccaccccccccgacgccgccggagg
gtcgctgacgccgccgacgccgagcgtcccaccatgtggcggctcccagctgccgctagg
cggcctccccagctaccctccctgctgctgctactcctgctgttctcagcggcagcgcca
tgggcagcagccgagcctgaccccaaacccaagcctcaggaagactactacgacggcgga
tatgataattacgaggactacgcagagtacacttacgaggataacgattatcccgatggg
actactgatgaagttgccgtcacagacgactcgcctccttacgaagcacccgacgctata
ataactgaggcaccctttgaagcctatgacccttacgattacacagaaccacccaccacc
accacaaccacaaccaccactaccacaactacccgtccccctactactacaacaactacc
accacaaccacccctcctcccacaacaacaacaacaacaaccacacctccacccccgccc
ccgacagttggttatgaaaggcaacccacgagaggaagaagaccaagtaggcgacggcag
ggggagcgcagaccccaggttgtacctgacccagaaggtatgattactgaagaaccacca
acagacattgttgggccgacagctccggataccggttatggcgcctccaccactggcgcg
gagggcccctctggaccaccaggagaccggggccccactggcacgccaggcagtcccgga
acccctggacaacctggaccccctggacccatgcctgatatttcaccatggttgacacag
ctttcgcagtcccaaggaggagagaaaggacctcagcctgatccatttagctacctgcaa
tctcaagttggacctgtcggacccagaggatccccaggagcaccaggtccctctggccct
caaggtttccagggaatgcgaggagaaccaggtgacccaggacccattggtccttctggt
cctccaggaccacgcggaatgcccggaatccctggaaaagatggtgagaatggagaggat
ggttctgctggtccaccaggctcagctggaccccctggtccccgtggtctgcccggcatg
cctggtcttcctggtgtgaagggacaccgtggcttctctggtctagacggagctaaggga
gaacagggtcagatgggtgacaagggagcagcaggacccggtggtccacctggccccatt
ggtccaatgggttcagctggtccacgtggtgaacgtggcagggaaggtccaccaggtccg
cctggcttaagaggtatcgatggcatcgctggtcctcctggtcctccaggtccacccggc
aagtctggtccccctggcttccctggaagtgctggagctaagggtgaccagggtgtacag
ggctctaagggttctcaaggtctccagggccctcgaggtgaagctggaaagcctggggct
ccaggagaaacaggaccgcaaggttcatcgggaaaagatggcctccctggagagaagggt
gcacctggttctcagggagattctggacccccaggtttcccaggggcccggggtccccca
ggtcttcctggtagccctggcatgcctggtaacaagggtgagaggggtctgggtggagag
cgaggcttcaagggtgaactgggaatgaagggagaaggtggaacacctggtcctcgaggc
cttcctggcgcccctggatcccctggtaaacgtggcaagagaggtatacgaggacctcct
ggaggagttggccctcagggtgagcgtggaccaacaggaggccgtggccttccaggtgct
gatggacctccaggccccaaaggtcagagtggtgaccctggccctacaggaactgttggc
cagaaaggccgtggtggagaccctggtccccctggcctgcctggccgtcaaggcttgcga
ggacccactggtctttctggtccatctggcaaaactggtcgccctggtgaccgtggtcca
ccaggcgctgacggcaaacctggtgatcaaggacctcagggtattcagggtctgcctggg
cctatgggacctcctggacctattggacctattggtgaagctggtaaggacggtaatccc
ggggagactggtgccactggcccccgtggtgatccaggaaaggatggtgctcaagggccc
ccaggcattgcaggaccaacaggtgcccctggtgagcgagggccccctggatcaccaggt
gctcgtggcttccagggtcttcctggttctcctggcatttctggtgctaatggcaaggac
ggagaggctggactacagggtcctcggggtctgcctggtggtgctggtctccgtggtcag
cgaggcttccctggagagcgaggagctcagggcccccctggagagacaggcaagcgtgga
gagtctggtcaggctggtcctgatggacctgcagggccttctggtccccctggacaaaag
ggtcattctggtccttctggtcttgtcggtctaccaggaggtcgaggaccttctggtctt
ccaggagagaaaggtgaacgtggagccttgggaagagttggacctgagggcccaccgggt
cgtcagggtgaccagggccctcaaggtatcatgggcccagttggacctccaggagaacct
gcagagaagggagacccaggtccaccaggtcctcctggtgagcctggtgccaatggaatg
acaggagaccgaggccaacagggcgagcagggtctgcaaggcttccctggacctattgga
cctcctgggtctgcaggaccaaaaggacaacgtggtctacctggccagaagggtgctcag
ggtaaccctggcttggtaggacaacctggagaacctgggcctcagggtctagctggactc
acgggtgcaaagggacagcgaggtgaacttggacaacgaggagagcctggtttgatgggt
ccccctggacgaccaggcaatgctggaacacctggaaccccaggtgaccaaggacctcca
ggtcctagtggcaaccctggaatcaagggaactcctggtgatactggtcgacctggtcta
cctggaccaactggtcagcctggtgcccctggagccgagggacctaagggtgaagctggt
cctgagggtcgtcccggagctattggtcaacctggccctgttggaccatcaggagaacgt
ggcctgcctggattgcctggaccacctggtccccctggccttcgaggaaaaactggcgag
cgtggtgaaccaggttcagaaggaaaacgtggtgatgaaggtcccattggtccccctgga
ttaactggtgctgttggtcccattggtcccactggtgacactggtgctcctggtgccgac
ggtaaacctggacctcctggtattgctggacgaacaggagacaaaggcccaccaggtaca
ccaggacctcaaggaggctctggacccactggtttacccggcccacctggtcctgctgga
cccattggcccgactggagaacgtggagatcgtggagaggttggtccacagggcgtggag
ggctcttcaggtcccagaggaaagcctggagcaccaggttcacaaggagagactggagaa
ccaggagcagtaggtccaaagggtgccaaaggacacagaggcctcattggtcttcaaggt
cttcctggtcctcagggtccatctggtgacaaaggtgtacccggtgttgctggtccacct
ggaccctctggtgaacctggtcctaagggtccacctggtcgcgatggaggaattggtcca
cagggtatcatgggtcctcctggtcctcgtggtcctagtggagaagaaggtaaatctggc
caacctggttcacctggtccagctggtcctcctggtccacctggcgaatctatgggttat
gatgcagcagcgctagcagctttgcttgggcagggccaggccaagggtccagatcctctc
caaggtgacgattccgaactgcctcctcgtctctttggcaaagaaattacagatgacgaa
cgtcgtgacctcattaccaaggcctacgagcaacttaagacatccttcaagaagttcctc
agaccagaaggctcgaaggactccccagcaaagacatgtcgggacctggcctacactcac
ccagaacttcctagtggagagtactgggtggatcccaatgagggtgatgtgaaagatgcc
attgtggttcactgcgacatggagaagaaggcaacgtgcatcttgccccagcctgatatg
acacaggaattcacatggcgtggacagcctcgaggaattgtctggctcggagaggacatc
aaaccaggttttgagttcacatataaggcggacagcaaccagatgcagttcctacagctg
ctgtcatcagaggcgacccaacagctcacttaccactgcaagaactccgttgctgtcttc
gactctcacaggagaaacctacgcaatgccttgcagatcatgactgtctcagacacagag
cttaaggccagaggaaacaggaagtttaaatacagagttattgaagatggctgtaaagcg
agacttcccacttgggcctccaccaagatcgagtaccgcacagagaagccacaacgacta
cccttcgtggacattggtgtgcgggacgtcggagaacccaaccaatcctttaagatcgaa
ctgggacccgtgtgctatgcgtag

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