Cherax quadricarinatus (Australian red claw crayfish): 128693980
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Entry
128693980 CDS
T09502
Symbol
Brr2
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
128693980 (Brr2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqd03041
]
128693980 (Brr2)
Enzymes [BR:
cqd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
128693980 (Brr2)
Spliceosome [BR:
cqd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
128693980 (Brr2)
Complex C
U5 SnRNP specific factors
128693980 (Brr2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_25
HTH_61
AAA_19
DEXQc_Suv3
nSTAND3
PhoH
TcA_RBD
DrmE_N
Motif
Other DBs
NCBI-GeneID:
128693980
NCBI-ProteinID:
XP_053639912
LinkDB
All DBs
Position
33:complement(23189242..23198813)
Genome browser
AA seq
2133 aa
AA seq
DB search
MADQTARQLQYEYKANSNLVLQADVRLIERRSKDEATGEVMSLSGKLEGTRMGDRYQRTK
PQQPKEEQRKSKKQKREDAPSIAVKSMSILELDDMADIFYRPKSTDTKQTYEVILSFIQE
ALGDQPRDVLCGAADEVLAVLKNDKLKDRERKKETEELLGSLAEERFAVLVNLGKKITDF
GHETKTVASEAVLDETHGVNVQFEDSEEEEEDEVAGEVGDEEEDEGENEEGMVGSHAIHA
ENLTGGEQVGAKKERVLSPHDIGAHWLQRELNRFYNDPIQAQTKSSDVLEILKSAKDDRE
CENKLVLNLGYDKFEFIKVLNKNRQMVLYCTLLASAQSESEKEDIRRVMLAESNLKRILA
LLENEEEAMDVTKDGEEIGGSRPRRINTEAMEVDDKSGQVPGHREFIDLESLVFTTGSHY
NSNKKCHLPEGSTRQMKKGYDEIHVPALKPKPFAPDETLVPIANLPAYTQPAFDGFKNLN
RIQSKLHKAAMDSDENLLLCAPTGAGKTNVALLTILREIGKNTNPDGTINSEAFKIIYVA
PMRSLVTEMTQNFSKRLEPYGLKVSELTGDHQLTREQIMETQVIVCTPEKWDVITRRGGE
RSYTQLVRLIIFDEIHLLHDERGPVLEALVARTLRNAETTGDAVRLVGLSATLPNYEDVA
AFLRVSLKTGLFFFDNSFRPVPLAQQYIGITEKKAIKRYQVMNDILYEKVMEHAGKNQIL
IFVHSRKETAKTAKAILDMCLEKDTLGNFLREGSASTEVLRTEADQVKNNDLKGLLPYGF
AVHHAGMNRVDRNLVEDLFADRHIQVLVSTATLAWGVNLPAHTVVIKGTQVYDASKGRWV
ELGALDVLQMLGRAGRPQYDTKGEGILITNHSELQYYLSLMNQQLPIESQLINKLPDLLN
AEIVLGSVQSVREAVNWLGYTYLYVRMIRAGNLYAVQADSSDKYLQQHRANLIHSAALKL
EKSNLIKYDKKSGNFQVTELGRIASYFYVTCETMNVYNQQLKPTLSEIELFRVFSQSSEF
KNIMVREEEKLELKKLMERVPIPIKESVEEPSAKVNILLQAYISQLKLDGFALMSDMVYV
TQSAGRLMRAMFEIVLHRGWAQLADKTLNLCKMVDKRMWQSMSPLRQFRKIPEEAIRKLE
KKSIPWERLYDLGPNEIGELIRMPKGGKMIHKYIHQLPKLDLETHIQPITRQMLKVELTI
TPDFKWDEKVHGRSEAFWIMVEDVDAENILHHEYFLLKQKFAEDEHVVKFFVPVFEPLHP
HYFIRITSDKWLSAETQLPVSFRHLILPEKYPPPTELLDLQPLPITALRNPQYETLYKTL
NKYQQFNPIQTQVFNATYNSDDSVFIAAPTGSGKTLCAEFAILRTFGQDESARCVYVASK
DEIVESMYEHWQEKFSNLDKRVVLLTGETGADLKLLNRANIVVSTAEKWDVLSRRWKQRK
NVQNINLFIVDELQLMGGSDGPTLEVVCSRIRYIASKISRHIRIVALSSSLANARDVAQW
LGCSSNYTFNFHPNVRPLPLELHIQGFNNPHNASRIYAMAKPAYLAILKHSPRKPAMVFV
PSRKQSMITASDLLTFAAADKEPQRFLQVNPEEMAEFLPQIGDEMLRELVSQGVGYLHEG
LSARDRRMVERLFEAEAIQVVVVSRALCWAVTAPAHLVIITDTQSYNGRLHNYEDYPITD
TLQMVGRANRPNEDDEAKCVLMCHSSKKDYFKKFLYEPLPIESHLDHALHDHFNAEIVTR
TIENKQEAVDYVTWTFLYRRMTQNPNYYGLQGVSHRHLSDHLSDLVENTLHDLEESRCIT
IEDDMDTAPLNLGIIASYYYINYTTIELFNKSLNSKTKIRGLLEIISSAAEYENVPIRHG
EEDTLRRLVQKVPNKPEGKVSDPHTKTNLMLQAHLSRLTLSAELQQDTELVLGRALRLIQ
ACVDVLSSNGWLAPALSAMTLAQMVTQAMWSKDSYLKQLPHFTSEMIERCEAKDVTSVFD
ILELEDDDRNRLLQLSDAQMTDVARFCNRYPSINLDYEVIDSDSITSGSMVNVEVVLERE
DEPGPVIAPLFPHKREEGWWVIIGDPKPNSLISIKRLTLQQKAKVKLDFVAPSEGSYEYR
LYFMSDAYMGCDQEYKVPLRVREAESESESESD
NT seq
6402 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccagactgcccgtcagctgcagtatgaatataaagcgaattccaaccttgtc
ttgcaagctgatgtccggctcattgagcggcgtagcaaggatgaagcaacaggtgaagtc
atgtccctctcagggaagctggagggaacacgaatgggggatcgatatcaacgtaccaag
ccacaacaacctaaggaggaacagcgcaagtccaagaagcagaaacgtgaagatgcccca
tccattgcagtaaaaagtatgagtattctagaacttgatgatatggcagacatattttat
cgtcccaagagcacagacacgaaacagacatatgaagttattttatctttcatccaggaa
gcattaggtgaccaacctcgtgatgtattatgtggtgctgctgatgaagttcttgcagta
ctaaaaaatgacaaacttaaagatcgtgagcgtaagaaagaaactgaagaattgttaggt
agccttgctgaagaaaggtttgctgtgctggtcaatttagggaaaaaaattactgatttt
ggtcatgaaacaaaaacagttgctagtgaagcagtcttagatgaaactcatggagttaat
gtgcagtttgaagattctgaagaggaagaggaagatgaggtagctggtgaagttggtgat
gaggaggaagatgaaggggaaaatgaagaggggatggttgggtcacatgccattcatgct
gagaatcttacaggtggtgagcaggttggagcaaagaaggaaagagtacttagtccacat
gatattggtgcacattggcttcaacgagaactaaacagattttataatgatcccatacag
gctcagactaaatcaagtgatgtacttgaaattttaaaatctgccaaagatgatagagaa
tgtgaaaataaacttgttctcaatcttggatatgataaatttgaattcattaaagttctt
aataaaaatcgtcaaatggtcctgtattgtacacttttggcttcggcacaatcagaatca
gaaaaggaagacatacggcgagttatgttagcagagtcgaacttaaagcgaatacttgcc
cttctagaaaatgaggaagaagcaatggatgtgactaaagatggagaagaaataggaggg
tcacgtcctaggaggataaacacggaagctatggaggttgatgataaatcaggtcaagtc
ccaggtcatagagaatttatagatttagaaagccttgtgtttactactgggtcacactac
aattctaacaagaaatgccatcttcctgaaggttcaacaagacagatgaaaaaagggtat
gatgaaatccatgtacctgctctaaaaccaaaaccttttgctccagatgaaactctggtt
cctattgccaacttgcctgcttatactcaacctgcatttgatggtttcaagaaccttaat
cgtattcaaagtaaattgcacaaagcagccatggacagtgatgaaaatttgcttctctgt
gcacctactggtgcaggcaaaacaaatgtggcattgctaaccattcttagagaaattggt
aaaaatactaatccagatggtaccataaattcagaggcttttaaaatcatctatgtagcc
cccatgcgctcacttgttacagaaatgacgcagaatttttcaaaaaggctggaaccttac
ggccttaaagtcagtgaactaactggagatcatcagttgacgagggagcaaattatggag
acccaggttatagtttgtactccagagaaatgggatgtcattactagacgtggtggagaa
aggtcatacactcagctcgtacgactaatcatctttgatgaaatccatcttcttcatgat
gagcgtgggccagttttggaggcactggtagccagaactctacgtaatgctgagacaact
ggggatgctgtcagactggtaggattgtctgctactttaccaaactatgaagacgttgca
gcttttctaagggtcagccttaaaacaggactcttcttctttgacaatagttttagacca
gtacctctggctcagcagtacattggaatcacagaaaagaaagcaattaagcgttatcaa
gttatgaatgatattttgtatgagaaagtgatggagcatgctggaaaaaatcagatcctg
atatttgttcattcacggaaagaaactgctaagactgcaaaagccatcctagatatgtgc
ctagaaaaggatactcttggaaatttcctaagagagggctctgcttcaacagaagtgttg
cgaactgaggctgatcaagtgaagaacaatgatctcaaaggactacttccatatggcttt
gctgtgcatcatgctggaatgaatcgagttgatcgaaatttagtagaagacttgtttgct
gatcgtcacattcaagttttagtgtccacagctacattggcttggggtgttaaccttcct
gcccacacagttgtgattaaaggtactcaagtatatgatgcaagcaaaggtcgttgggtg
gaacttggagccttggatgttcttcaaatgctaggtcgtgctggcagaccacaatatgat
actaagggtgagggcattcttattacaaatcattctgagcttcagtattatctatctctt
atgaaccagcaattgccaattgagtctcagcttattaacaagctaccagaccttcttaat
gctgagattgtccttggctctgtccaaagtgtacgtgaagctgtcaactggctgggctat
acatacttgtatgtgcgcatgattagagctggtaatctctatgctgttcaggctgatagt
tcagataaatatcttcagcagcaccgagcaaatcttatacattctgcggctttgaaactg
gagaagagcaatttgataaaatatgacaaaaaatcaggaaattttcaagtcacagaattg
ggtcgcattgccagttatttctatgttacttgtgagacaatgaatgtttacaatcaacaa
ttgaagcctactttaagtgaaattgaacttttccgtgtcttctcgcaaagttctgaattt
aaaaatattatggtaagagaagaagaaaaattagaattgaagaagctcatggaacgtgtc
ccaattcctataaaagaaagtgtggaagaacctagtgcgaaggttaacattcttttgcaa
gcttatatctctcaattaaaattagatggatttgctctcatgtcagacatggtatatgtg
actcagagtgcaggacgattgatgagagcaatgtttgagatagtccttcatcgtgggtgg
gcacagttggcagataaaactttgaacttgtgcaaaatggttgataaaaggatgtggcag
tcaatgtctcctttgagacaatttagaaaaattcctgaagaagctattcgtaaacttgag
aagaaaagcattccctgggagcgtctttatgatctgggcccaaatgagatcggagaacta
attcgtatgcccaaaggtggaaagatgattcataaatatatccaccagttgcctaaactt
gacttggaaacccacattcaacccattacacgtcaaatgcttaaagtagagctcactatc
acaccagattttaagtgggatgaaaaggttcatggtcgctcagaagctttttggataatg
gttgaagatgttgatgctgaaaatattcttcatcatgaatactttctgttgaaacaaaag
tttgcagaagatgagcatgtagtcaaattctttgttcctgtatttgagcctctccaccca
cattacttcatacgtattacatcagacaaatggctctcggcagaaactcagttacctgta
tcattccgtcatctcatacttccagagaagtatccacctcccactgaacttcttgatttg
cagccattgcccattactgctttaagaaacccacagtatgaaacactttacaaaacacta
aacaaatatcagcagttcaaccctattcaaactcaagtattcaatgctacatataattct
gatgacagtgtattcattgcagccccaactggttcaggtaaaaccctctgtgctgagttt
gctattttgcgtactttcggccaggatgaatctgcaagatgtgtgtatgtagcatccaaa
gacgagattgttgagagtatgtatgaacactggcaagaaaaattcagcaacttggacaag
agagttgtacttctgactggtgagactggggctgacttaaaactcttaaatagggcaaac
attgttgttagtacagctgaaaaatgggatgtgctatcaagacgttggaaacagaggaag
aatgtacagaacatcaatctctttatagttgatgaactgcaattaatgggtggctcagat
ggacctacactggaggtagtttgctctcgtatccgttacattgcatctaagatcagtaga
cacattcgtatagtagccctgagctcctccttggcaaatgctagagatgtagctcaatgg
cttggatgttcctctaactatactttcaattttcatccaaatgttaggcccttaccactt
gagttacatattcagggcttcaataatccacacaatgcatctaggatttatgctatggct
aaacctgcttaccttgctattctgaaacacagtccccgtaagcctgccatggtgtttgtg
ccatctcgaaagcaaagtatgattacagctagtgaccttctcacttttgctgctgctgat
aaagaaccacaaagattcttacaggtgaatccagaagagatggcagagttccttccccaa
attggtgatgaaatgttgagagaactggttagtcagggtgttgggtatcttcacgaaggc
ctcagtgcacgtgaccggcggatggtggagagattgtttgaggcagaggcaattcaagtg
gtagttgtgagtcgtgccttgtgttgggcggtaactgcacctgcacatttggtcattatc
actgatactcagagttacaatggccgtctgcacaactatgaggattatccaattactgat
accttacaaatggttggccgtgctaatcgaccaaatgaagatgatgaggcaaagtgtgta
ctaatgtgtcattcttccaagaaggactactttaagaaattcctttatgagccactaccc
attgaaagccatcttgaccatgcacttcacgatcacttcaatgctgaaattgtaacacgt
accattgaaaacaaacaggaggcagtagactatgtaacatggacattcctttaccgccgt
atgactcagaatcccaactactatggccttcagggagtctcacatcgacacttatctgat
cacctttctgatttagtagaaaacaccctacatgaccttgaagagtctcgctgtatcacc
attgaagatgacatggacacagctccactcaatttaggcattattgcttcatattactac
atcaactatactaccatagaattgtttaacaagtctttaaatagtaagacaaagattcga
ggtctgctggaaatcatctccagtgcagcagagtatgaaaatgttcctattcgtcatggt
gaagaggacacattgagacgtcttgtacaaaaggttcctaacaaacctgagggaaaagta
tcagatccccacacaaaaaccaaccttatgttacaggctcatctgtcacgtctcactctt
agtgcagaattgcaacaggatacagaacttgttcttggtcgtgccttgaggctaatacag
gcatgtgttgatgtgttatcttccaatggatggctggcacctgctttgtctgctatgact
ttagctcagatggtgactcaggctatgtggtcaaaagattcttacttgaaacagttgcct
cattttacaagtgaaatgatagaacgttgtgaagctaaagatgtaacatcagtgtttgat
attctagagcttgaggatgatgatcgtaaccgtttactacagttatctgatgctcagatg
acggatgtggctcgtttctgtaatcgctatcctagcattaatttagattatgaagtgatt
gattcagattctattaccagtgggtcaatggtgaatgtagaagtggtacttgagcgtgag
gatgagcctggaccagttattgctcctctgttcccacacaagcgagaagagggttggtgg
gttattattggtgatcccaaaccaaactccctcatctccatcaagcgtctcacccttcag
caaaaagccaaggtgaagttggattttgtagcacctagtgaaggttcttatgagtatagg
ctatatttcatgagtgatgcttacatgggttgtgaccaggaatataaagtgccattgaga
gtgagagaagcagagtcagagtcagagtcagagagtgattag
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integrated database retrieval system
