Cherax quadricarinatus (Australian red claw crayfish): 128697221
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Entry
128697221 CDS
T09502
Name
(RefSeq) pre-piRNA 3'-exonuclease trimmer isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128697221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqd03019
]
128697221
Enzymes [BR:
cqd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128697221
Messenger RNA biogenesis [BR:
cqd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128697221
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
TilS-like
Motif
Other DBs
NCBI-GeneID:
128697221
NCBI-ProteinID:
XP_053644759
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All DBs
Position
89:complement(7813526..7875855)
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AA seq
540 aa
AA seq
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MVDITTNNFNNILPEILSDVKSSSFVALDTEFTGLLADAAFKGSLFDGGPQRYQKLVSNI
RRFTVCQLGLAVFKGVPDVNAYTVTSYNFYLRPHSCVSFDPTFMCQSSSLEFLQKYKFDF
NKWLYYGVPCMNSDEAEELRGELSSIVKGNKVFRIPYEIQDQLSTIGEWAAAASDGDTTT
PSISHDVTSQVLLVTSIRNRFTDLWAALDNGQVLVQKVSSCERERLEAKDPEGTEFIDSI
VTNMLGFTTIFRCLADHHKPLVLHNCLLDLMLIYKQFHQNLPPSYEVFKSNLHEMFPLIY
DTKFIATELKYFYKEKNDQVRSLFSNTGLVELSSCLKRDESVLYLPTLSHHPPDNKYSGS
EMLLHEAGYDAYLTGGCFLHMAHLHAMLQIPSLQHRPMSPREHVFALKNLANQVQIQRAA
VRCVALNGPDPPLKRPPWLVVEGRSRSMRVTPGMVSLALAQYGNPDVIPRNNNSVLVATT
SWKCTRDILTDLAEDRYMKAQLYKKLRHSPLVRSLAWSGVVMSTGLSVWIVYSTLRKSSS
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggtggacatcacgaccaacaacttcaacaatattcttccagaaattctctccgacgtc
aagtcgtcttccttcgtggcgctcgacactgaatttacaggacttttggcagacgctgca
tttaaaggaagtttatttgatggtggaccacagaggtaccagaagctggtgtccaacatc
cgcaggttcacagtatgccagcttggattagcagtatttaagggtgttccggatgtcaac
gcatacaccgtgaccagttataacttctacctgcgaccccactcatgtgtatcgtttgat
cccacatttatgtgccagtcctcgagtctagagtttctacaaaaatataagtttgacttc
aataagtggttgtattatggagtgccttgtatgaactctgatgaagctgaagaacttcga
ggtgaattatcatctattgtgaaaggaaataaagtctttagaattccttatgagatacag
gaccagttgagtaccataggggagtgggcagcagctgccagtgatggagacacaactact
ccctccatcagccatgatgttacctcccaggtgctactagtgaccagcatacgcaacagg
tttacagacctctgggctgctctagacaatggacaggtcctagttcaaaaagtgtcgtcc
tgtgaacgtgaaagacttgaggcaaaagaccctgaaggcacagagtttatagactccatt
gtgaccaacatgctgggatttaccaccattttccgctgtttagcagatcatcataagcct
cttgttctccacaattgcctcctggatcttatgttgatatacaagcagttccatcagaac
ctgcctccatcatacgaagtttttaagtccaacttgcacgagatgtttcctctcatctac
gacacaaagttcattgctacggaacttaaatacttttataaagaaaagaatgaccaagtt
aggagtttgtttagcaataccgggctggttgagctatcttcatgccttaagagagacgag
tcggtcttatacctacctacactctcgcatcatcctcctgacaacaagtacagtggaagc
gagatgctgctccatgaagcaggctatgatgcctacctaactggtggctgtttcctccat
atggctcaccttcatgccatgctccaaataccttcgttgcagcatcgacctatgagcccc
cgggagcatgtctttgccctcaagaacctagccaaccaagtgcagatacagagggcggca
gttcgttgtgtggcactgaatggtccagatccacccttgaagcgacctccctggctggta
gttgaaggtcgcagtaggtcaatgagagtgacccctgggatggtctctctggctctggca
cagtacgggaaccccgatgtaatccctcgcaacaacaactcggtcctagttgctacaacc
tcgtggaaatgcaccagagatatcttgactgatcttgctgaggacagatacatgaaagct
caactctacaagaagctaagacattcaccgcttgtaaggtcccttgcttggtctggtgtc
gtaatgtcgactgggttaagtgtgtggatcgtgtattctactctcagaaagtcatcttca
tag
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