Cherax quadricarinatus (Australian red claw crayfish): 128700604
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Entry
128700604 CDS
T09502
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
128700604 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cqd03400
]
128700604 (Msh6)
DNA repair and recombination proteins [BR:
cqd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
128700604 (Msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
ENTH
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
128700604
NCBI-ProteinID:
XP_069954948
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All DBs
Position
65:1085900..1222558
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AA seq
1284 aa
AA seq
DB search
MSKQPSIFKFFSKSPSQNKSQNKKTTKENVKLSGNDITPLDMVWAKMDGYPWWPALVCEN
PQEKSFLRNGLIHVQFFDNPPTRGWVKEAFVKPYCVPGQNGMPTYKDPAWLNAVEEAKGA
EQLSREDRSMLIVKMMPSDDEAMEDDDDDTDKSKENIDLNISKIKNKKAGNGEPEPKRRR
IILHSDTESEDEYKPGKDDVESDNESLSSAVDENEVSEIETASEVDSPIKAPANKRKKPA
LPKGRNLNSSLLSSPLASKSPAPTPSRGTSKLLEGTKSKLSMFAAKETPSQVQESSEDWP
FLKYPWLQPENIRDREKRSPDHPEYNPRTLYVPESFLNQQTPALRQWWDIKSQHYDTVLF
FKMGKFYELFNMDATLGVQELGLIMMKGEKAHVGFPEIAYGRYSSTLIEKGYKVARIEQT
ETPDMMEKRCKNLSRPTKFDRVVRREVCQVSSRGTRVYSFLDGEAAETSTSYLLALTERP
VRGSGEGCEFGVAFVDTSIGVFHVGQFTDDRHVSRLCTLMAHYPPAQILFERGRLSQKTQ
KLVNSAVPPNLRENLAPEKEFWTSSKTLGFLAEGSYFKDEGGDSTVQWPKQLRKMIDDGN
SLGTTARSKYELAVSALGALTWYLMDCRLEEQLLTMCNFELYKPLDVATLTENEKNSSVP
AFIKRRHHMVLDGTTLRNLEAFENTNGGVEGTLIDKLDRCSTPFGKRLLRKWICAPLCSP
SSINSRLDGIEDLQNNPDIMEEVTTLLKSLPDLERVLARIHTQGLNRNNSSHPDSRAIFF
EDVKYNKKKVTDFLAGLNGFKTTLQIIKAFKGIKTSLKSKLLHKCITNTKEGGNFPHLSD
ALKFFDNAFDHEEAQKEGKIIPSPGVDTEYDEAVEHIKKTKDELSDYLEEQCRHFGAKVV
YWGSDKKRYQLEVPEHVSKKAGDSYELQGQKKGYKRFWTPTTKKLLADMISGEEHRDAAL
NDISRRIFHQFDEHHKKWEAVVQCLSVLDVLISLTCYAKEVSTVRPNVVMPEEKVQPFLE
IRDGLHPCVTATFSGDEFIPNDVVMGGTSEDAHSNLVLVTGPNMGGKSTLMRQTALICIL
AQLGSFVPARSCQLTPIDRVFTRLGASDRIMMGESTFFVELAETSSIIQHSTQHSLVLVD
ELGRGTATYDGTAIASAVVKAIVQLKCRTLFSTHYHSLVDDFANVKYVSLGHMACMVEGE
NEDDPSQETITFLYKFTKGACPKSYGFNAARLAELPDEVIRRGSQKAQDFEKSNIKKQAF
SKIFSTNCEPENLRNSIQKIRNLE
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacaaccttctatatttaaattcttctccaaatcgccctcgcagaacaagagc
caaaataagaagacgaccaaggagaatgtcaagctcagtggaaatgatattaccccactg
gacatggtttgggccaagatggatggatacccttggtggcctgcacttgtgtgtgaaaat
ccacaagaaaagtctttccttcgtaatggtctaatacacgtgcaattttttgacaaccca
ccaactagaggatgggtgaaggaggcgtttgtgaagccctactgtgtaccaggacaaaat
ggcatgccaacatataaagatccagcttggcttaatgctgtagaggaagctaagggagca
gaacagctttccagagaagacagaagtatgttgattgtgaagatgatgccctcagatgat
gaagcaatggaagatgatgatgatgatacggacaaaagtaaagaaaatatcgacctgaat
ataagcaaaattaaaaataaaaaagcagggaatggagagccagaaccaaagcggcgaagg
ataattctccattcagacacagagtctgaggatgaatataagccaggcaaggatgatgtt
gaaagtgataatgaatcattaagttctgcagtggatgaaaatgaagtatctgagatagaa
actgcttcagaagttgattctcctatcaaggcacctgcaaataagcgcaaaaaaccagca
ttaccaaagggacgtaatttgaattcttctctcttatcctctccattggcatctaaatct
cctgcgcctacaccttccagaggtacttccaaacttttggaaggtaccaaatccaagctt
tccatgtttgctgcaaaagagacaccttcacaggtccaagaaagctctgaagactggcct
tttcttaagtatccttggctacagcctgagaatatacgtgatcgtgagaagcgttcacct
gaccaccctgagtacaatccaagaactctatatgtacccgagagctttctgaatcaacag
actccagcattaagacagtggtgggacatcaaatctcagcattatgatactgttttgttc
ttcaaaatgggcaaattttatgaactgtttaacatggatgccacactgggagtacaggaa
ttaggcctcattatgatgaagggagaaaaggctcatgtaggatttccagaaattgcttat
ggacgctattcctcaactttgatagaaaagggttataaagttgcacgtattgagcagact
gaaactccagacatgatggagaagcgttgtaaaaatttgagtcgtccaacaaagtttgat
cgtgttgtgcgacgtgaagtgtgccaagtgagcagcagaggaactagagtctacagcttt
ttggatggagaagccgcagaaacttcaacatcttaccttttagctcttactgaaaggcct
gtgcgaggatctggagaaggctgtgagtttggtgttgcatttgttgataccagcatagga
gtatttcatgtgggccagtttactgatgaccgccatgtatccaggctgtgtaccttaatg
gctcattatccgccagctcagattctctttgagcgagggagactttctcagaaaacacaa
aaattagtaaattcagctgtgcctccaaacctgcgagagaatctagctccagagaaagag
ttttggacatccagcaagactcttggcttcttggctgaaggcagttactttaaagatgaa
ggaggtgattccactgtacagtggccaaaacaactaagaaaaatgatagatgatggtaac
tcgttaggcaccacagcacgatctaagtatgaacttgcagtgtcagctcttggtgcactc
acttggtatctgatggattgcagacttgaagaacaattacttacaatgtgcaattttgaa
ttgtataaacctcttgatgtagcaactttaacagagaatgagaaaaattcttctgttcct
gcattcattaaaagaagacatcacatggtacttgacgggacaacacttcgtaacctagaa
gcatttgagaatactaatggtggtgttgagggaactctcattgataagctagatcgctgt
tcaaccccatttgggaagaggttacttcgcaaatggatttgtgctccactatgcagtccg
tcaagcatcaatagtcgtttggatggtatagaagatctgcaaaacaaccctgatataatg
gaggaggtgacaactcttctcaagagtcttcctgatttggagagggtccttgccagaatc
cacactcagggcttgaatcgcaacaactccagccatccagacagtagagccatattcttt
gaagatgttaaatacaataaaaagaaagttactgatttccttgctggactaaatggattc
aaaactactcttcaaataataaaagcttttaaaggcatcaagacatcactaaaatcaaag
ttgctgcacaaatgcataacaaatacaaaagagggtggcaattttcctcatttaagtgat
gctttaaagttctttgataatgcctttgatcatgaagaggcacagaaggagggcaaaata
attcccagcccaggtgttgacactgaatatgatgaagcagttgagcatatcaagaaaact
aaagatgaactatcagattacctcgaagaacaatgcagacactttggtgcaaaggtggtg
tactggggtagtgataagaaaagatatcagctggaagtgccagagcatgtcagtaagaaa
gctggtgacagttacgagctgcagggtcaaaagaaaggttacaagcgattctggacacca
accactaaaaaattattagcagacatgattagcggagaagaacatcgggatgcagctctt
aatgatatatcacgcagaatattccatcagtttgacgaacaccataaaaaatgggaagca
gttgtgcagtgtttgtcagtgcttgatgttctgatatctcttacatgttacgcaaaggaa
gtcagtactgttagaccaaacgtagttatgcctgaagaaaaagttcagccattcctagaa
atcagagatggtcttcatccatgtgtgacagcaacgtttagtggtgatgaattcattcct
aatgatgtggttatgggtggcactagtgaagatgctcattcgaacctggtgctggtcaca
ggaccaaatatgggtggcaaatcaacacttatgagacagactgctcttatatgtattcta
gcacagttgggatcatttgttcctgcaaggtcatgccagttgactccaatagatcgggtt
tttaccagacttggagcatctgatcggatcatgatgggagaatccacattcttcgtagag
ttggcagaaacatcttccattatccagcattctacccaacattcacttgttttggttgat
gaactgggccgtggtacagcaacttatgatggcacagcaattgcatctgcagtggtgaaa
gcaatagttcagctaaagtgtcgaacactcttctccactcattatcactctttagttgat
gatttcgctaatgtgaaatatgtttctcttggtcatatggcttgtatggtagaaggagaa
aatgaagatgacccatcacaagaaactatcactttcctttacaaatttaccaaaggtgcc
tgcccaaaatcctacggttttaatgctgcacgtttggctgaactacctgatgaagttatt
cgtaggggtagtcaaaaagcacaagactttgagaaatctaacattaaaaagcaagcattt
tcaaagatattcagcacaaattgtgaaccagaaaatttaagaaactccattcaaaagatc
cgtaatttagagtga
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