Cherax quadricarinatus (Australian red claw crayfish): 128700744
Help
Entry
128700744 CDS
T09502
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd04140
Autophagy - animal
cqd04142
Lysosome biogenesis
cqd04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
128700744
04140 Autophagy - animal
128700744
04148 Efferocytosis
128700744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cqd04131
]
128700744
Membrane trafficking [BR:
cqd04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
128700744
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CNH
Vps39_1
zf-Vps39_C
Clathrin
VPS18_solenoid_2nd
TPR_Vps41
Beta-prop_RIG_2nd
Lgl_C
Motif
Other DBs
NCBI-GeneID:
128700744
NCBI-ProteinID:
XP_053650115
LinkDB
All DBs
Position
56:complement(20673207..20734263)
Genome browser
AA seq
881 aa
AA seq
DB search
MHDAYEAIPILEKLPLQIEAVTAYDGNLVVGTRQGHLLMYTVTPGTTRRWDVALLCSNKN
FSRKPIVQVAVIPEHQIIVSLSDNVVSVHDLTVFNLPLLCILTQTKGATAFDLDIKHHVS
LTGDAVVMVRLVVAVRRKLQLFYWKSRKFHQLREDLVLPDVPRALTWCMEAIAVAFKHEY
WLVKLTGEQKELFATGRSQEPLITRMVDGEQLALAHDKETIFVDADGNATCSYTLKWVEQ
PLCLAYDKPYLIAILSKTIEIKTTEPQITVQVLNLDKPKLLAVGQSSKGKSQVYVASSSH
VWCLHAIPINQQIPQLLVEKQFGLALNLVDVWDEAEDAKSQMQKHIQHLQAIHLFCSKNY
PEAMKLFFALNTDLPFVIGMYPDMVPEEYRSRLRYPYPIPTLSGTDLEQALQALVHFLLE
VRHKLSNTDCEANVEDSSDNKFSSTGAASLKSRNEKLQIIDTTLLKCYVQTNDSLVQPLL
RMRDSRVSVVEGERVLRHAHKYPELVLLLQTRLLHQRALQLLIRHAKRSDSPLFGHHHTV
TYLQQLGPQQIDLIFEYGGWVLKSHPEDGLKIFIGDKSTSGEVDQLPRPKVLNFLKKTEK
SLVIPYLEHVIQEWGDTTPLLHNELIHQYRDIVSAPYQSSDPANVEEEKGRRQLVREKLV
KFLNDSQYYTAATLLVHFPYDSLHEERAVLMGRLGQHHQALSIYTHTMRDTQAALNYCQK
HYTTSGSGSEVYLTLLKLLVSPVDTRSPSESPIKQQQQQQQTRQPDVEAVLQLLQNYLHC
IDLGQALKVLPDEVTLNLLKPFFHASFSLASTVCKQKQIARGLTQSLKLQTSEELSSCQR
LKILLSEYTYCAVCSKRFTKHSAFAWYPNGDIVHFSCQSQR
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatgcctacgaggccattcctatcttggagaagctgccgctgcagattgaagca
gtcacggcctatgatggcaatctggtggtgggaacgaggcagggtcatcttctcatgtat
acagttacacctggtaccactcgacgttgggatgttgcacttctctgctctaataaaaac
ttctctcgcaaaccaattgttcaagtggctgtaatacctgagcatcagattattgtctcc
ttatcagataatgtagtaagcgttcatgatctgactgtcttcaatctacctcttctctgt
attttgactcaaaccaagggtgcaactgcctttgatcttgatattaagcaccatgtgtca
ttgactggcgatgcagtagtaatggtacgtttggttgtggctgtgagacgtaagcttcag
cttttttattggaaatcaagaaaatttcaccaacttcgtgaggatcttgtattacctgac
gtgcctcgagctttaacgtggtgcatggaggcaattgctgttgcattcaagcatgaatat
tggcttgtcaagctaacaggcgagcagaaagagctatttgctactggtcgcagccaagaa
ccactgataacacgaatggtagatggagaacagctagccttggcccatgacaaagaaacc
atttttgttgatgctgatgggaatgccacctgcagctacactttaaaatgggttgaacaa
cctctctgcttggcctatgacaagccatacttaatagctatcttgtcgaagacgatagaa
attaagactacagaacctcagattactgtacaagttctcaacttagacaagcctaaactt
cttgcagtgggacagtcttcaaaaggaaaaagtcaagtttacgttgcgtcatcatctcat
gtgtggtgtttacatgcaatccccatcaatcaacagatcccacaacttctagttgagaaa
cagtttggactggccttaaatcttgttgatgtgtgggatgaagcagaggatgcaaaatct
cagatgcaaaaacatatccagcatttacaagctattcatctcttctgtagtaaaaactac
cctgaagcaatgaaactgttttttgctcttaacacagatctcccatttgtcattggcatg
tatccggacatggttcctgaggagtaccgaagccggcttcggtatccatatcccattcca
acactaagtggtacagacttagagcaggcactccaagctcttgtgcattttctgttggag
gtgcgtcacaagctgtcaaacactgactgtgaagcaaatgtggaggatagttcagataac
aagttttcttccacaggagcagcaagcttaaagtctcgcaatgagaagctccagatcatt
gacacaacactcttgaaatgttatgtgcagactaatgacagtcttgtacagccccttctt
cgaatgcgagatagccgcgttagtgtagttgaaggagaacgtgttctacggcatgcccat
aagtatcctgagttggttcttctacttcaaactcgtttacttcatcagcgggctctccag
ctcttgatccgccatgctaagagatcggactctcctttgtttggtcaccaccacactgtg
acttacctgcagcaacttggtcctcagcaaatagatctgatttttgaatatgggggatgg
gtgctaaagtcacatcctgaagatggactgaaaatttttattggtgacaagtccacgtca
ggtgaggtggatcaattgccgcgacccaaagtactcaactttctaaagaaaactgagaaa
tctctagtcattccatatctggaacatgtaattcaagaatggggagacactactcctctc
ctgcacaatgagttgatccaccagtaccgtgatatagtctctgctccatatcagtcaagt
gatccagctaatgtagaggaggagaagggaagaagacaacttgtccgtgagaaacttgtg
aagttcttgaatgactctcaatattacactgcagcaaccctcttggttcatttcccctat
gacagtctccatgaagagcgagcagtgctgatgggtcgtctgggccaacaccatcaagcc
ctctccatctacactcacacaatgagggacacacaggcagcactcaattactgtcagaag
cactacactacctctggatctggcagtgaggtgtacttgacactcctaaagttgctcgtc
agtcctgtggatactagaagtccctcagagtctccgatcaagcagcagcagcagcagcag
cagacaagacaaccagatgtggaagctgttcttcagcttctgcagaattatctacactgc
atagaccttggccaggcactgaaggtcctaccagatgaagttacattaaatcttttgaag
ccatttttccatgcatcatttagccttgccagtactgtctgcaaacagaaacaaatagct
cgaggactcacacagtcacttaaactccagactagtgaagagcttagttcatgccaaaga
ttgaagatcttgctgtcagagtatacctactgtgctgtatgcagtaaaagatttaccaaa
catagtgcttttgcttggtatccaaatggagacatagttcacttttcatgccagagtcag
aggtaa
DBGET
integrated database retrieval system
