Cherax quadricarinatus (Australian red claw crayfish): 128701546
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Entry
128701546 CDS
T09502
Symbol
DNAlig1
Name
(RefSeq) DNA ligase 1 isoform X1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cqd
Cherax quadricarinatus (Australian red claw crayfish)
Pathway
cqd03030
DNA replication
cqd03410
Base excision repair
cqd03420
Nucleotide excision repair
cqd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cqd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
128701546 (DNAlig1)
03410 Base excision repair
128701546 (DNAlig1)
03420 Nucleotide excision repair
128701546 (DNAlig1)
03430 Mismatch repair
128701546 (DNAlig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cqd03032
]
128701546 (DNAlig1)
03400 DNA repair and recombination proteins [BR:
cqd03400
]
128701546 (DNAlig1)
Enzymes [BR:
cqd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
128701546 (DNAlig1)
6.5.1.6 DNA ligase (ATP or NAD+)
128701546 (DNAlig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
128701546 (DNAlig1)
DNA replication proteins [BR:
cqd03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
128701546 (DNAlig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
128701546 (DNAlig1)
DNA repair and recombination proteins [BR:
cqd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
128701546 (DNAlig1)
NER (nucleotide excision repair)
Other NER factors
128701546 (DNAlig1)
MMR (mismatch excision repair)
Other MMR factors
128701546 (DNAlig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
128701546
NCBI-ProteinID:
XP_053651259
LinkDB
All DBs
Position
78:complement(2643471..2673812)
Genome browser
AA seq
1269 aa
AA seq
DB search
MAPPGTSSSGSFFSAPKAKKEELSSEGSSQGTSNETMTSKKGKESLTKKVPHKVRVIESD
SEEEAAEEEVASISSPHKSDEEKENKTKRPQNALSKGKEKIAKGKNGKKSVGRPQMKKDT
TPEQKTDKEDIKKSKRNQTTKKSITKVPKERKSQKDCPPSKKRKSTGTDENEEGNREEKM
KTDAGGDGEEDLEADSNDDDTFVAEKDSEVESLNETLETEDVDGDSADDKVRESNKDHLT
KKDGNKVKIEDKLAKFKKTCENIKETTPEKSENKDEEDGDDEKADKKTCKGKKDLTPKKD
KSRDKEDGDKDAKIDKEAPEGKEGHKTGKGENKEKEAKTKTSFRETNLASPNKSSTLSQR
SSPGFTPDTVPPIRKTARKQLKRKSDSLESKQMSIIKKLKGEDDGDIASKTSNEDDIKPK
DEDVESVKDEEREMTDDADSLESEEKCLVKEDEDGVRSETVMMGSLKNEVKKEKTEDKEE
PMEVDSNDSKNEDQSSASSRPKPMAIHSFFSPRSTATPKKSATYTKNSPKGKKVSPSKES
SNLLKKAGPSSASSPSKNRIDENTSEEEHDSSPQKRDRSHKNESPLKSNSSEKSEKKNII
NPFAPKISGTGDVGASYNPGKSKYHPIKDAFWSRLEKVPYLALAKTMEIIENTSGRLKTI
EILANFFRSVIILTPDDLLLCVYLCLNKVAPSFEGIELGIGETILMRAIAQASGRTVEKI
KQDAEQKGDLGIVAEHSRSNQRIMFQPAKLTVRGVFDKLKEIALMTGNASQNKKIDKIKG
MFVACRFSEARYLIRSLGGKLRIGLAEQSVLQAVAQACFLTPPGQEYPPEVIDAGEGISA
DKLKAKIDNYGLILKTTYCEFPSYDKIIPVILSEGLEELPNHCRLTPGIPLKPMLAHPTS
GVSEVLKRFEKAKFTCEFKYDGERAQIHLKEDGTINIYSRNQEDNTSKYPDIIARLKSAV
GDEVKSCVIDSEAVAWDREKKQILPFQVLSTRKRKDVNESDIKVQVCLFPFDLLYLNGEA
LVREPFERRRALLRENFKEVEGEFVFAKSMDSTNTEDIEEFLEESIKGNCEGLMVKTLEV
DATYEIAKRSHNWLKLKKDYLDGVGDTIDVVVIGGYMGRGKRGGHYGGFLLACYDPDNEE
YQTLCKIGTGFSDEDLLTHSTFFKCHVIEKPKSYYRYDNSIAPDNWFEPVQVWEIKCADL
SISPVHKAAAGVVDPERGISLRFPRFLRIREDKTPEDATSSAQIADLYNSQEQIKNKKTS
GKAVEEDFY
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctccgggaacctctagttctggatcgttcttctcggctccgaaggcaaaaaag
gaggagctttcatctgagggaagttcacaaggaacaagcaatgaaacgatgacttcgaag
aagggcaaagagtcacttaccaagaaagtgccacataaagtacgagtaattgagagtgac
agtgaagaggaggcagcagaggaggaagttgcttctataagttctccacacaagtccgat
gaggagaaggaaaacaagacaaaaagaccacaaaatgctctgagtaaggggaaggaaaaa
attgccaagggtaagaatggaaagaagtctgttggcaggccacagatgaaaaaagatact
accccagaacagaagactgataaagaagatataaaaaaatctaaaaggaatcaaaccaca
aaaaaatcaataacaaaagtgcccaaggaaagaaaatcccaaaaagattgtccaccatcg
aaaaaaaggaaaagtaccggcacagatgaaaatgaggaaggtaacagagaggaaaaaatg
aagacagacgcaggtggagatggggaagaagaccttgaggcagattccaatgatgatgat
acatttgttgcagaaaaggattcagaagtagaaagtcttaatgaaacattggagacagaa
gatgtagatggagattcagcagatgataaggtacgtgaaagtaataaagaccacttgaca
aaaaaagatgggaataaggttaagatagaagataaacttgcaaaatttaagaaaacatgt
gaaaatataaaagagactacaccagagaagagtgaaaataaagatgaggaagatggggat
gatgaaaaggctgataagaagacgtgtaaaggtaaaaaagatcttacaccaaaaaaagat
aaaagcagggataaggaagatggcgataaagatgcaaagattgataaggaagcacctgaa
ggtaaagaaggtcataaaacagggaaaggtgaaaataaagagaaggaagctaaaacaaaa
acaagtttcagagaaacgaacctcgcatccccaaataaatcatcgaccttgtcacagaga
agttcacctggctttacacctgacactgtcccacctataagaaagactgctcgtaagcaa
ttgaaacgtaaaagtgacagccttgaaagcaagcaaatgagtataataaagaagttaaaa
ggggaagatgatggtgacattgcatcaaagaccagtaatgaagatgatattaaaccaaaa
gatgaagatgtggagagtgtgaaggatgaagagagagaaatgacagatgatgctgacagc
cttgaaagtgaggaaaaatgtttggtgaaggaagatgaagatggtgtcagatcagaaaca
gtaatgatggggagtttgaagaatgaagtaaaaaaggagaagacagaagataaagaggag
ccaatggaggttgacagtaatgacagcaagaacgaagaccaaagttcagcctccagcaga
cccaagccaatggctatacacagctttttctctcccagatcaacagcaactccaaagaaa
tctgccacatataccaaaaactctccaaagggaaagaaggtgtctccatccaaggaatct
tctaatttgcttaagaaagctgggccaagtagtgcatcttcaccctcaaagaaccgtata
gacgaaaacacatcagaagaggaacacgattcctctccacagaagagagatcgatcccac
aagaatgagtcgcccctaaagagcaattcttcagagaagtctgagaaaaaaaatatcata
aatccctttgctcctaaaatttctggcactggtgatgtgggtgccagctataacccaggc
aagagtaaatatcacccaatcaaagatgctttctggagcagactagaaaaagtcccatat
cttgctttagcgaagacgatggagattatagagaacaccagtgggagacttaagaccatt
gagattctggccaatttctttcgttcggtgataatcttaactcccgatgatctcttgctg
tgtgtgtacctgtgtctcaacaaagttgccccatcatttgaaggtattgagttgggcata
ggagaaacgatattaatgcgtgccatagctcaggcatcaggaagaactgtggaaaagatc
aaacaagatgctgaacagaagggagacttaggaattgtagccgagcattcgagatccaac
cagaggataatgttccagcccgccaagctcactgtccgaggggtgttcgacaaactgaag
gagattgctctcatgactggcaatgcttcacaaaataagaaaatagataagataaaagga
atgtttgtagcttgtcggttttccgaagcacgatacctcattcgttccctgggtgggaag
ttgcgtattggtctggctgagcagtcagtgcttcaggctgtagctcaggcttgcttcctc
accccgccaggccaggagtatcccccagaggttattgatgctggtgagggcatttctgct
gataagttgaaggcaaagattgacaactatgggttgattctaaagacaacctattgtgag
tttccttcatatgataaaatcattccggtgattctaagcgaaggcctcgaggagctccct
aaccactgtcgcttgacaccaggcatcccactgaagcccatgttagcgcaccctacctca
ggggtgtcggaagttttgaaacgctttgaaaaggccaagttcacatgcgaattcaagtat
gatggagaaagggctcagatccatttaaaggaggatggtactataaatatttacagcagg
aaccaggaagacaacaccagcaagtatcctgacattattgcccgcctcaagagtgcagtt
ggagatgaagtaaaatcttgtgtgattgactcagaagctgtagcttgggaccgggagaaa
aaacagatccttcccttccaagttctaagcactcgaaaaagaaaagatgttaatgaaagt
gacatcaaggtacaagtttgtctgtttccttttgacttactctacctgaatggcgaagct
ctagtgcgtgaaccttttgagcgtcgtagagctcttttacgtgaaaacttcaaggaagtt
gaaggagagtttgtgtttgccaaaagcatggattcaaccaacactgaagacatagaagaa
ttcctggaggaatctattaaaggaaactgtgaaggtctcatggtgaagaccctggaggtg
gatgccacgtatgagatcgcaaaacgctcgcataactggctcaagctgaaaaaggactac
cttgatggggtgggagatacaatagatgttgtagtgattggtggctacatgggaagaggc
aaacgcggaggccattatggcggcttcctcttagcttgttatgacccagataatgaggaa
tatcagacactttgtaagattgggactggtttctcggatgaagatttgctgactcattct
actttcttcaaatgtcatgttatagagaaaccaaagtcttactatagatacgacaatagc
atcgctccagacaattggtttgaacctgtgcaagtgtgggagataaagtgtgctgacctc
tccatatcgccagtacacaaggctgccgcaggggttgttgatccagaaaggggcatctct
cttagattccccagatttttacgtattagggaagacaagacaccagaggatgctacaagt
tcagcccagattgctgatctttataatagccaagaacagataaagaataaaaagacttca
ggaaaagcagttgaagaagacttttattaa
DBGET
integrated database retrieval system
