Curtobacterium flaccumfaciens: GBG65_05660
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Entry
GBG65_05660 CDS
T06246
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cqf
Curtobacterium flaccumfaciens
Pathway
cqf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cqf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GBG65_05660 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqf03021
]
GBG65_05660 (rpoB)
03400 DNA repair and recombination proteins [BR:
cqf03400
]
GBG65_05660 (rpoB)
Enzymes [BR:
cqf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GBG65_05660 (rpoB)
Transcription machinery [BR:
cqf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GBG65_05660 (rpoB)
DNA repair and recombination proteins [BR:
cqf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GBG65_05660 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QFS79145
LinkDB
All DBs
Position
complement(1157827..1161315)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAAAPNASTNPKNGRNHSRLSFAKITDTLTVPDLLALQTESFDWLVGNDVWKARLAEGQE
QGRTDLALHSGLEEIFEEISPIEDLGETMQLSFTAPELEDPKYSIDDCKERGKTYAAPLY
VNAEFMNHMTGEIKTQTVFMGDFPLATERGTFIINGTERVVVSQLVRSPGVYFERQQEKT
SDKDIYSARIIPSRGAWLEFEIDKRDQVGVRIDRKRKQSVTVFLKALGLTSEEIMDEFQG
FASIESTLEKDAVLTKEEALKDIYRKLRPGEQVAAEAARALLDNFYFNPKRYDLAKVGRY
KVNRKLGMDAPLSDSVLTVKDIVATIKYLVSLHAERTTIDGVRDGEPVQLRLDVDDIDHF
GNRRIRAVGELIQNQVRTGLSRMERVVRERMTTQDIEAITPQTLINVRPVVAAIKEFFGT
SQLSQFMDQNNPLAGLTHKRRLSALGPGGLSRERAGVEVRDVHPSHYGRMCPIETPEGPN
IGLIGSLASFGRINSFGFIETPYRRVVNGEVTKTIDYLTASEEDEFVVAQANAPLTNDFH
FADDKVLVRKKGGEVELVARDEVDYMDVSPRQMVSVATSLIPFLEHDDANRALMGANMQR
QAVPLLRSESPLVGTGMEGYTAIDAGDVVTADKAGVVSEVSADAVTLQLDEGGTQTYYLR
KFDRSNQGTSYNHRVIVSAGERVEQGEVIADGPATENGELALGKNLLVAFMPWEGYNYED
AMILSQNLIKDDTLSSIHIEEYEVDARDTKLGKEEITRDLPNVSPDLLADLDERGIIRIG
AEVRPGDILVGKVTPKGETELSAEERLLRAIFNEKSREVRDTSLKVPHGEEGTIIGVKVF
DSQDGDDELGSGVNQRVVVYIAQKRKITAGDKLAGRHGNKGVISTILPVEDMPFLADGTP
VDIVLNPLGVPGRMNFGQVLEIHLGWLAKQGWNVEGIQEWAENLPEAAHSAEPGTKVATP
VFDGAYEREIEGLLDSTLPNRDGERLIGSSGKAQLFDGRSGEPFPEPVSVGYMYILKLHH
LVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
ILGRVKVYEAIVKGENIQEPGIPESFKVLMKEMQSLCLNVEVLSADGQAVSLRDNDDEVF
RAAEELGINISSRFESSSVDDI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggctgctgcgcccaacgcatccaccaaccccaagaacggtcgcaaccactcgcgactc
tcgttcgccaagatcacggacaccctcacggttcctgatctgctcgcactccagacggag
agcttcgactggctcgtcggcaacgacgtctggaaggcccgcctcgccgaagggcaggag
cagggtcgtaccgacctcgcactgcactcggggctcgaggagatcttcgaggagatctcc
ccgatcgaggacctcggcgagaccatgcagctctcgttcaccgcgccggagctcgaagac
ccgaagtactcgatcgacgactgcaaggagcgcggcaagacctacgccgctccgctgtac
gtcaacgccgagttcatgaaccacatgacgggtgagatcaagacgcagacggtcttcatg
ggcgacttcccgctcgcgaccgaacgcggcacgttcatcatcaacggcaccgagcgcgtc
gtcgtgtcgcagctcgtccgttcgcccggcgtgtacttcgagcgccagcaggagaagacc
tccgacaaggacatctactcggcgcggatcatcccgtcgcgtggtgcctggctcgagttc
gagatcgacaagcgcgaccaggtgggcgtgcgcatcgaccgcaagcgcaagcagtccgtg
accgtcttcctcaaggccctcggcctgacgagcgaagagatcatggacgagttccagggc
ttcgcgtcgatcgaatcgaccctcgagaaggacgccgtcctcacgaaggaagaggcgctc
aaggacatctaccgcaagctccgtcccggcgagcaggtcgctgccgaggccgcgcgtgcg
ctcctcgacaacttctacttcaacccgaagcgttacgacctggcgaaggtcggccgctac
aaggtcaaccgcaagctcggcatggacgccccgctgtccgactcggtgctcaccgtcaag
gacatcgtcgcgacgatcaagtacctggtgtcgctgcacgctgagcgcaccacgatcgac
ggcgtccgtgacggcgagccggtgcagctgcgcctcgacgtggacgacatcgaccacttc
ggcaaccgtcgcatccgcgccgtcggcgagctcatccagaaccaggtccgcacgggtctg
tcccgcatggagcgcgtcgtccgcgagcgcatgaccacgcaggacatcgaggcgatcacg
ccccagacgctcatcaacgtgcgtccggtcgtcgccgcgatcaaggagttcttcggaacg
tcccagctgtcgcagttcatggaccagaacaacccgctcgcgggcctgacgcacaagcgt
cgtctctcggccctcggcccgggtggtctgtcccgtgagcgtgccggcgtcgaggtccgt
gacgtccacccgtcgcactacggccgcatgtgcccgatcgagaccccggaaggcccgaac
atcggcctgatcggttcgctcgcgtccttcggtcggatcaactccttcggcttcatcgag
accccgtaccgtcgcgtcgtcaacggcgaggtcacgaagaccatcgactacctcaccgct
tcggaagaggacgagttcgtcgtcgcgcaggccaacgccccgctgacgaacgacttccac
ttcgccgacgacaaggtgctcgtccgcaagaagggtggcgaggtcgaactcgtcgccagg
gacgaggtcgactacatggacgtctccccgcgccagatggtgtcggtcgcgacgtcgctc
atcccgttcctcgagcacgacgacgcgaaccgcgccctgatgggtgcgaacatgcagcgt
caggccgtcccgctgctccgttccgagtcgccgctcgtcggtaccggcatggagggctac
acggccatcgacgccggcgacgtcgtcaccgccgacaaggccggtgtcgtctccgaggtc
tcggccgacgccgtcaccctgcagctcgacgagggcggcacgcagacctactacctgcgc
aagttcgaccgctccaaccagggcacgagctacaaccaccgcgtcatcgtctccgcaggc
gagcgtgtggagcagggcgaggtcatcgccgacggtcccgcgacggagaacggcgagctc
gcgctcggcaagaacctcctcgtcgcgttcatgccgtgggagggctacaactacgaggac
gcgatgatcctgtcgcagaacctcatcaaggacgacacgctctcctcgatccacatcgag
gagtacgaggtcgacgcccgcgacaccaagctcggcaaggaggagatcacccgtgacctc
cccaacgtcagcccggacctgctggccgacctcgacgagcgcggcatcatccgcatcggt
gccgaggtccgccccggcgacatcctcgtcggcaaggtcacgccgaagggcgagaccgag
ctgagtgccgaggagcgtctgctccgtgccatcttcaacgagaagtcgcgcgaagtccgc
gacacctcgctcaaggtgccccacggtgaagagggcacgatcatcggcgtcaaggtgttc
gactcgcaggacggtgacgacgaactcggctctggtgtcaaccagcgcgtggtcgtctac
atcgcccagaagcgcaagatcaccgcgggtgacaagctcgccggtcgtcacggcaacaag
ggcgtcatctcgaccatcctcccggtcgaggacatgccgttcctcgccgacggcaccccc
gtcgacatcgtcctcaacccgctcggcgtccccggccgcatgaacttcggccaggtgctc
gagatccacctcgggtggctcgccaagcagggctggaacgtcgagggcatccaggaatgg
gccgagaacctgccggaggcagcgcacagcgccgagcccggcaccaaggtcgccaccccg
gtgttcgacggtgcgtacgagcgcgagatcgagggcctcctcgactcgaccctcccgaac
cgcgacggcgagcgactgatcggctcgtccggcaaggcgcagctcttcgacggccgctcc
ggcgagccgttcccggagcccgtctcggtcggctacatgtacatcctcaagctgcaccac
ctggtcgacgacaagatccacgcgcgttcgaccggtccgtactcgatgatcacgcagcag
ccgctgggtggtaaggcgcagttcggtggacagcgattcggtgagatggaggtgtgggcg
ctcgaagcgtacggtgccgcctacgccctccaggagctcctgacgatcaagtccgacgac
atcctcggccgcgtgaaggtctacgaggcgatcgtcaagggcgagaacatccaggaaccc
ggcatccccgagtccttcaaggtcctcatgaaggagatgcagtcgctctgcctgaacgtc
gaggtcctctcggccgacggccaggcggtcagcctgcgcgacaacgatgacgaggtcttc
cgcgctgcggaggagctgggcatcaacatctcctcgcggttcgagtcgtcctccgtcgac
gacatctga
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