Curtobacterium flaccumfaciens: GBG65_08705
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Entry
GBG65_08705 CDS
T06246
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
cqf
Curtobacterium flaccumfaciens
Pathway
cqf03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cqf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GBG65_08705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cqf03400
]
GBG65_08705
Enzymes [BR:
cqf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GBG65_08705
DNA repair and recombination proteins [BR:
cqf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GBG65_08705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QHN62904
LinkDB
All DBs
Position
1756164..1758698
Genome browser
AA seq
844 aa
AA seq
DB search
MSPASRKTVVLVGDRRLALTNTDKVLYPETGTTKGRVIEYYERVAPWMIPHVKDRPVTRK
RWANGVEGKVFFEKNLPDSAPDWVRHHTIHHSEHDNEYPIVDDLPTLVWMAQQAALELHV
PQWRFGPRGAQQNPDRLVLDLDPGDGVGLPECVEVAVAAREILHGMGLDPYPVTSGSKGI
HLYAALDGKATTAQVSDVAHELAKALETDLPDLVLSSMSRAERKGKVFVDWSQNNGNKTT
IAPYSLRGRERPTVAAPRTWKELEERGLAQLTLDEVLERLEARGDFLHPVASASLAVGRD
DHGHWDSDRTERANDAEQPARDRLAAYRAKRDASKTPEPVPEGAPTVRKDGTPTFVIQEH
HATRDHYDFRLEHDGVLVSWALPKGEPTDPGKNHLAVQTEDHPLEYGSFEGTIPKDEYGG
GTVTIWDDGTYELEKWRDGQEVIVTLHGRAGGARRLALLHTRGRGGGDEKNWLIHRTKEQ
PERLADGGGSAGPAVARRSERPSDGHGDAHRAGQRRISGAADAETPPSERRTMQATLVKG
EPRLDPADWAFEMKWDGVRALATVRDGSVTLRSRNDNDLTAQYPELQELGERAGVDGVFD
GEIVAVDDRGRPSFQLLQNRMGLTKAREVRSAQETAPVRFLLFDVLEADGHELTRLGYDA
RRQALETVVEPGGAIDVPPAVQGDLDAVLAASREQGLEGVVAKKRSSKYAEGRRSEAWLK
LKHHATQEVVVGGWKPGSGRRAGGIGSLLLGVPGPDGLEYVGKVGTGFRDRDLDEIAGVL
APLERKTPPFVDVPRPDARDAHWVTPKRVGEVEFAEWTGDGRLRQPSWRGWRVDKDPDDV
VRES
NT seq
2535 nt
NT seq
+upstream
nt +downstream
nt
gtgagtcccgcctcgcgcaagaccgtcgtcctggtcggggaccggcggctcgcgctcacg
aacaccgacaaggtgctctaccccgagaccggcaccaccaagggtcgggtgatcgagtac
tacgagcgggtcgcgccgtggatgatcccgcacgtcaaggaccgcccggtgacccggaag
cgctgggccaacggtgtcgagggcaaggtcttcttcgagaagaacctgcccgactcggcc
cccgactgggtgcggcaccacaccatccaccactcggagcacgacaacgagtacccgatc
gtcgacgacctgccgaccctggtgtggatggcgcagcaggccgcgctcgaactgcacgtc
ccgcagtggcggttcggcccacgcggcgcgcagcagaacccggaccggctcgtcctcgac
ctcgacccgggtgacggcgtcgggctgcccgagtgcgtcgaggtcgccgtggccgcgcgc
gagatcctgcacggcatgggactcgacccgtacccggtgacgtccggctccaagggcatc
cacctgtacgcggcgctcgacggcaaggcgacgacggcgcaggtctccgacgtcgcccac
gagctggccaaggccctcgagacggacctgccggacctggtgctgtcgtcgatgagccgt
gccgagcggaagggcaaggtcttcgtcgactggtcgcagaacaacggcaacaagacgacc
atcgccccgtactcactgcgcggccgcgagcggccgacggtcgcggcgcctcgcacctgg
aaggagctcgaggaacgcgggctcgcccagctcacgttggacgaggtcctcgaacgcctg
gaggcccgtggggatttcctgcacccggtcgcctccgcctcgctggccgtcgggcgcgac
gaccacggtcactgggacagcgaccggaccgagcgcgcgaacgacgccgagcagcccgca
cgtgaccggctcgccgcctaccgggcgaagcgggacgcctcgaagacgccggagcccgtg
cccgagggagcgcccaccgtgcggaaggacggcacaccgaccttcgtgatccaggagcac
cacgccacccgcgaccactacgacttccggctcgaacacgacggggtgctggtgagctgg
gccctgccgaagggcgagccgaccgacccgggcaagaaccacctggccgtgcagaccgag
gaccacccgctcgagtacgggtcgttcgagggcacgatcccgaaggacgagtacggcggc
ggcacggtcaccatctgggacgacggcacctacgagctcgagaagtggcgcgacgggcag
gaggtcatcgtcaccctgcacggtcgggccggcggcgctcgccgtctcgcgctgctccac
acccgcggccgtggcggcggggacgagaagaactggctcatccaccgcacgaaggaacag
cccgaacggctggcggacggcggcggctctgccgggccggcggtggcgcgacggtcggag
cggccgtcggacgggcacggcgatgcgcaccgcgccgggcagcgacggatcagcggggcc
gcggacgccgagaccccaccgtcggagcgccggacgatgcaggcgaccctggtcaagggg
gagccccggctggacccggccgactgggccttcgagatgaagtgggacggggtgcgcgcg
ctggcgacggtccgcgacggatcggtgaccctacgcagccgcaacgacaacgacctgacg
gcccagtaccccgagctgcaggaactgggcgagcgggccggcgtggacggcgtgttcgac
ggtgagatcgtggccgtcgacgatcgcggccgaccatcgttccagctgctccagaaccgc
atgggcctgacgaaggcgcgcgaggtccggagcgcacaggagaccgcgcccgtgcggttc
ctgctgttcgacgtgctcgaggcggacgggcacgagctcacgcggctcggctacgacgcc
cggcggcaggcactcgagacggtcgtggaaccgggcggcgcgatcgacgtgccgccggcg
gtgcagggcgacctcgacgcggtgcttgctgcatcgcgtgagcagggcctcgagggcgtc
gtcgcgaagaagcggtcgtcgaagtacgctgagggccggcgatccgaggcctggctgaag
ctcaagcaccacgccacgcaggaagtcgtcgtcggcgggtggaaaccgggcagcggtcgg
cgagccggcgggatcgggtcgctgttgctcggagtgcccggccccgacgggctggagtac
gtcggcaaggtcggcaccgggttccgtgaccgcgacctcgacgagatcgccggtgtcctc
gcaccgctggaacggaagaccccgccgttcgtcgacgtcccacgacccgacgctcgagat
gcgcactgggtcacgccgaagcgcgtcggcgaggtcgagttcgccgagtggaccggcgac
ggacggctccggcagccgtcgtggcgcgggtggcgggtggacaaggacccggacgacgtc
gtgcgggagtcctga
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