Curtobacterium flaccumfaciens: GBG65_10710
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Entry
GBG65_10710 CDS
T06246
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cqf
Curtobacterium flaccumfaciens
Pathway
cqf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GBG65_10710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqf03019
]
GBG65_10710
03009 Ribosome biogenesis [BR:
cqf03009
]
GBG65_10710
Enzymes [BR:
cqf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GBG65_10710
Messenger RNA biogenesis [BR:
cqf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GBG65_10710
Ribosome biogenesis [BR:
cqf03009
]
Prokaryotic type
rRNA helicases
GBG65_10710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
HEM4
adh_short
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QFS79784
LinkDB
All DBs
Position
2148114..2149922
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AA seq
602 aa
AA seq
DB search
MSTDTTPTTETLDDGPVVTFADLGLSDAVLKAVKDIGYETPSAIQEATIPTLLAGRDVVG
LAQTGTGKTAAFALPILSRMESGSKKPQALVLSPTRELALQVCEAFEQFASHMKNVHVLP
VYGGQAYGVQLSALRRGVDVIVGTPGRIMDHLAKGTLDLSELKYLVLDEADEMLKMGFAE
DVETILADTPDDKQVALFSATMPAQIRRISQQYLTDPAEITVKTKTKTAANITQRYLMVS
YPQKVDALTRILEVEDFEGMIIFVRTKSETETLAEKLRARGYAAAAISGDVAQAQRERTV
NQLKSGKLDILVATDVAARGLDVDRITHVVNFDIPVDIESYVHRIGRTGRAGRSGDSISF
VTPRERRLLSAIERHTKQPLTQMQLPTIDDVNETRLTRFDDAITAALEDQGRIAAFRDVI
AHYVEHHDVPSDDVAAALAVVAQGDSPLLLTAADDALRSQMERDARRSERDERGARDDRG
GRNDRGDRGGDRDRGDRGDRGPRRSQPMSPYRIEVGRRHRVEPRQIVGALANEGGLRRDD
FGAIQIRPDFSIVELPADMDPGVLDRLTDTRISGKLIEIRADRRGGGRRDDREDRPERKP
RY
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggacaccacccccaccactgagaccctcgacgacgggcccgtggtgacgttc
gccgatctcggcctgagcgacgctgtgctcaaggccgtcaaggacatcggttacgagacc
ccttccgccatccaggaagccaccatccccaccctcctcgccgggcgcgacgtcgtcggc
ctggcacagaccggtaccggcaagaccgcggccttcgcgctgccgatcctgtcccgcatg
gagtccggcagcaagaagccccaggcgctcgtgctgtccccgacgcgcgaactcgccctg
caggtgtgcgaggcgttcgagcagttcgcgtcccacatgaagaacgtccacgtcctgccg
gtctacggcggccaggcgtacggcgtgcagctctccgccctgcgccgcggcgtcgacgtc
atcgtcggcacccccggccgcatcatggaccacctggcgaagggcacgctcgacctgtcc
gagctgaagtacctcgtgctcgacgaggccgacgagatgctcaagatgggcttcgccgag
gacgtcgagacgatcctcgccgacaccccggacgacaagcaggtcgcgctcttctcggcg
accatgcccgcgcagatccgccgcatctcgcagcagtacctgaccgacccggccgagatc
accgtcaagaccaagacgaagaccgccgcgaacatcacgcagcgctacctgatggtctcg
tacccgcagaaggtcgacgcgctcacccgcatcctcgaggtcgaggacttcgagggcatg
atcatcttcgtccgcaccaagagcgagaccgagaccctggccgagaagctccgtgcccgc
gggtacgccgccgctgcgatcagcggtgacgtcgcccaggcccagcgtgagcgcacggtc
aaccagctgaagtcgggcaagctcgacatcctggtcgccaccgacgtcgccgcccgtggc
ctcgacgtcgaccgcatcacgcacgtcgtgaacttcgacatcccggtcgacatcgagtcc
tacgtgcaccgcatcggtcgtaccggccgtgccggccgctcgggtgactcgatcagcttc
gtcaccccgcgtgagcgtcgcctgctgtccgcgatcgagcgccacaccaagcagccgctc
acgcagatgcagctgccgaccatcgacgacgtcaacgagacgcgcctgacccgcttcgac
gacgccatcaccgcggcgctcgaggaccaggggcggatcgcggccttccgcgacgtcatc
gcgcactacgtcgagcaccacgacgtcccctcggacgacgtcgccgcggccctggccgtc
gtggcgcagggcgactcgccgctgctcctcaccgcagccgacgacgccctccgcagccag
atggagcgcgacgcccgccgcagcgagcgcgacgagcgcggtgcccgcgacgaccgtggc
ggccgcaacgaccgcggcgaccgtggtggcgaccgcgaccgtggtgaccgcggcgaccgt
ggcccgcgccgttcgcagccgatgtccccgtaccgcatcgaggtcggccgtcgtcaccgc
gtcgagccgcgccagatcgtcggtgccctggccaacgagggtggcctgcgccgcgacgac
ttcggtgcgatccagatccgaccggacttctcgatcgtcgaactgccggccgacatggac
cccggtgtgctcgaccgcctgaccgacacccggatcagcggcaagctcatcgagatccgt
gcggaccgccgtggtggtggccgccgcgatgaccgcgaggaccgtccggagcgcaagccg
cgctactga
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