Chenopodium quinoa (quinoa): 110681837
Help
Entry
110681837 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110681837
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110681837
03012 Translation factors [BR:
cqi03012
]
110681837
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110681837
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110681837
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110681837
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
R3H
Helicase_C
OB_NTP_bind
HA2_C
ATPase
HA2_N
AAA_22
Ank_2
AAA_19
nSTAND3
AAA_7
Rad17
PhoH
Motif
Other DBs
NCBI-GeneID:
110681837
NCBI-ProteinID:
XP_021713661
LinkDB
All DBs
Position
Unknown
AA seq
1183 aa
AA seq
DB search
MTKSSKKRQKYGSLFAPEHTAGVDEIVRIKIHNILEQFRSSHDQVYTFEPNMTNHERAVV
HQESKKMGMISKSSGKGKQRRVAVFKSKPKLESSEQRENPVITFSDESKRVLNDLFIRYP
PGEDEVGKEYSNGPTDNNNPRPRGKRENIFCKPLMNKDEIEKQAELLTSKIQQKHHLQEI
SKKRSKLPIATFQDVITSTILTHQVVLISGETGCGKTTQVPQYLLDSMWARGEACKIICT
QPRRISAMSVADRISHERGENIGESVGYKIRMDTKGGRNSSIVFCTNGIMLRVLVSGGSN
GSQPGSVDLSQISHIIVDEIHERDRYSDFMLAILRDLLPTYPHLRMVLMSATLDAERFSN
YFGGCPVIRVPGFTHPVKTFYLEEILSILRTPDKNHLNSSLSSQVNEEGSLSEQSRMALD
EAIEMSSSNEEFDTLLELISSEGTSKVLNYQHSLTGVSPLMVFAGKGRVGDICTLLSLGA
DCHLQAHDGSTALDWAKREDQSEAVEIIMKHMVDSSSSSVEEQQLLEKYMSTTNPDFIDV
VLIEKLLRKICMESENGAILVFLPGWEDINRTRETLLANPFFKDSHKFAIFSLHSMVPSA
EQKKVFNRPPVGCRKIILSTNIAETAITIDDVVYVLDSGRMKEKSYDPYSNVSTLQSSWT
SKASAKQREGRAGRCQPGVCYHLYSKLRAVSFLDFQVPEIRRMPIEELCLQVKLLDPNCK
VEDFLKKTLDPPVSETIKNAITVLQEIGALSHDEGLTELGRKLGSLPVHPLTSKMLFFAI
LLNCLDPALTLACAADYRDPFTLPMLPNEKKRAVAAKAELASLYGGNSDQLAIVAAFDCW
RNARKMGQESRFCSEYFVSSSIMHMLSGMRNQLANELSRTGCIPDDISSCSMNAREPGII
RAVIVAGMYPMVGRLHPPIRRGKRLTVETANSGYDRVLLHPQSMNSKLFMKNTDELALLV
YDEVTRVDGSLHTRNTTIISPIPLLLLATEIVVAPARDTGDDDSGSDAAGDEDSDEGEME
CLEKKNEKPEDKVMSSPENSVTLIVDRWLPFVSTALEVAQIYCLRERLSAAILFKVTYPK
KVLPPALGTSIYAIACVLAYDGMTGVSILKESVDTLTSMVHNTGIGNSSAEQNKANPAAK
SFLISLFSYSAQYHESSSQPVQVQTKKHSSKRRRGNKSGQGGP
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaatcatccaaaaagaggcagaagtacggctcattattcgcaccggagcatact
gccggcgtcgatgaaatcgtccgcattaaaattcacaatattctcgaacagtttcgttct
tctcatgatcaagtatatacttttgaacctaacatgactaaccatgaacgtgctgtggtt
catcaagagtccaaaaaaatgggcatgatttcaaaaagttctgggaaagggaaacagcgg
cgtgttgcagtattcaaaagcaagccaaagttagaaagctcggagcaaagggaaaatcct
gtgatcacattctcagatgaatctaaaagggttttgaatgacctttttattcgttatcca
cccggtgaggatgaagttggaaaagaatattctaatgggcctactgataataataatcct
aggccacggggtaaaagagagaatatattctgtaagcctttaatgaacaaggatgaaata
gaaaagcaggcggagttgctcacgagcaagatacagcaaaaacatcacttgcaagagata
tctaagaaaaggtctaagcttcctattgcaactttccaggatgttattacgtcaacaatc
ttaactcatcaggttgtgctcatatctggagagactggttgtgggaagactacacaggtc
cctcaatatcttttagattccatgtgggctaggggtgaggcttgtaaaataatctgtaca
caaccacgacgtatttcagctatgtcagttgcggacagaatttctcatgaaagaggagaa
aatattggagaaagtgttggatacaagataaggatggataccaaaggtggaagaaattca
tctattgtattttgcacaaacggaatcatgctgagggtgcttgtttctggtggctctaat
ggatcccaaccaggatctgtagatctttctcagatctcccacattattgtggatgagatt
catgaaagggatcgatactctgactttatgcttgcaatcctcagagacttgcttccaacc
tatccacatctacgcatggtacttatgagtgctacacttgatgctgaaaggttttctaat
tattttggaggctgtccagttatccgtgtgccgggattcactcatcctgtcaaaactttt
tacttggaggaaattctgtccatattgagaactccagacaagaatcatcttaactctagt
ttgtctagtcaagtgaatgaagagggcagcttaagtgagcagtctcgtatggcactagat
gaggcgattgagatgagtagttcaaatgaagaatttgatactctcctagaattgatttct
tcagaaggaacatctaaagttctgaattaccagcattctttaactggagtgtccccgtta
atggtatttgctggtaagggaagagttggtgatatttgtacacttctttccttaggtgca
gattgccatctgcaggcccatgatgggagcactgctttagattgggctaagcgtgaagat
cagtctgaagctgtagaaatcattatgaaacacatggttgatagctcttcgagctcagtg
gaagaacagcagttgcttgaaaaatacatgtcaactactaatcctgattttattgatgtt
gtcttaattgagaagttgttgaggaagatatgcatggagtccgagaatggagctattctt
gtttttcttccaggatgggaagatataaataggactcgggaaactttattggctaatcca
tttttcaaggactcccataagtttgcaattttctctcttcactctatggttccatcagct
gagcaaaagaaagtttttaatcggccacctgtaggttgtcgtaaaattatcctttcgact
aatatagccgagactgccatcaccattgatgatgttgtctatgtccttgatagtggtcga
atgaaggagaaaagttacgatccatacagtaatgtgtcaaccctgcaatcttcttggact
tcaaaggcaagtgcaaaacaacgagaggggcgtgcaggccgttgccagcctggcgtctgt
tatcatctctattcaaaacttcgagcagtctcctttctggatttccaggtgcctgaaata
aggagaatgccaatagaggaactatgtttgcaggtcaagttgcttgatccgaattgcaaa
gtagaggattttttgaagaaaacactagatcctccagtatctgagacaataaaaaatgct
attactgttctacaagaaattggcgcgttgtcacatgatgagggattgacagaattagga
aggaaactgggttctttgcctgtgcatccattaaccagcaagatgctattctttgctata
ttgttgaattgcctggatcctgccttgacgcttgcttgtgcagctgattatagagacccc
ttcactttacctatgttacccaatgaaaagaaaagagcagttgcagcaaaagcagagctt
gcgtcattgtacggaggaaatagtgatcaattggcgattgttgcagcatttgactgctgg
aggaatgcaaggaaaatgggtcaagaatcacggttttgttctgaatattttgtgtcgtcg
agcattatgcatatgctgtctggtatgcgtaatcaacttgcaaatgagttaagcaggact
gggtgtataccagatgacatatcaagctgtagtatgaatgccagggagccgggcataatt
cgtgcagttattgtggctggcatgtacccgatggtgggaaggttgcatccacctattagg
aggggtaaaaggctgactgtggagacggctaatagtggttatgatagagttctattacac
ccacaatcaatgaactcaaagttatttatgaagaatactgatgagctagctctactcgta
tatgatgaggtaactagagtggatgggtctttgcacacaaggaacactactattatcagt
ccaattcctttattattacttgcaacagaaattgttgtggcacctgcaagggacactggt
gatgatgatagtggaagtgatgctgctggtgatgaagatagtgatgaaggtgagatggaa
tgccttgaaaagaaaaatgaaaaaccggaagacaaggtcatgtcgtcacctgaaaattct
gttacattaattgttgatcgctggctgcccttcgtatcaacagctcttgaagttgctcag
atttactgtttgagagagcggttgtctgcggctatccttttcaaagtaacataccccaaa
aaggttcttccgccagctctgggaacatccatttatgcaattgcttgtgttcttgcatat
gatgggatgacgggagtttcaatactcaaggaatctgtggacactttgacttcaatggta
cataatactggaattggtaattcatctgcagaacagaataaggcaaatcctgctgcaaaa
agtttcctcatatctctattcagctatagtgctcaataccatgaatcttcatcgcagcct
gtgcaagtgcaaactaagaaacactcatcaaaacgacgacgtggcaataagtccggccaa
ggagggccgtaa
DBGET
integrated database retrieval system
