KEGG   Chenopodium quinoa (quinoa): 110683044
Entry
110683044         CDS       T05764                                 
Name
(RefSeq) THO complex subunit 6-like
  KO
K13175  THO complex subunit 6
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03013  Nucleocytoplasmic transport
cqi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110683044
  09122 Translation
   03013 Nucleocytoplasmic transport
    110683044
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cqi03019]
    110683044
   03041 Spliceosome [BR:cqi03041]
    110683044
Messenger RNA biogenesis [BR:cqi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     110683044
Spliceosome [BR:cqi03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    110683044
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st WDR55 Beta-prop_WDR41 Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz EIF3I WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EIPR1 Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_ACSF4 Beta-prop_VPS8 Beta-prop_EML WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_IP5PC_F Beta-prop_Nup120_160 DSE1_N Beta-prop_WDR75_1st Ge1_WD40 DUF7303 AAA_33
Other DBs
NCBI-GeneID: 110683044
NCBI-ProteinID: XP_021715074
UniProt: A0A803MGD1
LinkDB
Position
Unknown
AA seq 372 aa
MVMDATNWDEDAYRNTILHERETQCRTVFRAIFAPSNPNHNPNPDIVVAASSDGSVAAYS
LSSILSSIESRYGVPTPQQVFTAEPYCFLQAHEGPAYDVKFYGDDDDALLLSCGDDGWIR
GWKWKELEESETPIHKQGSHVKPSIDLMNPQHRGPWYATSPISENNAIAVDHQRGSIYAA
AGDSCAYCWDVETSKIKTVFKGHLDYLHSIIAPTGSNQIITGSEDGTARIWDCRNGKCVQ
VISPKRESLKEVSSVSCIALDASESWLACGSGKSLYVWNLLASEQISRISTPTTCQDVVF
DDNHILAVGASSMLSRMDMNGKILSQIRCAPESAFSVSLHQSGVIVVAGYTGLVDVVSQF
GSHSCTFRCTSV
NT seq 1119 nt   +upstreamnt  +downstreamnt
atggtgatggacgccaccaactgggacgaagacgcttacaggaacaccatcctccatgaa
agagaaactcaatgtcgaacagtttttcgtgccatttttgctccttcaaaccctaaccat
aaccctaatcccgacattgttgttgctgcttcaagtgatggttcagtcgctgcttattct
ctctcctccatactctcttccattgaatcgcgctatggcgtgccgactcctcaacaagtg
tttactgctgaaccttattgctttcttcaagcgcatgagggtcctgcttatgatgttaag
ttttacggcgatgatgatgatgctttgttgttgagctgtggagatgatggctggatacga
gggtggaaatggaaggaacttgaagagtcagagacacctatacataaacaaggctcccat
gtaaaaccttctatagacttgatgaatccacaacacaggggtccgtggtatgctacatct
ccaatatcggagaacaatgcaattgctgttgatcaccagagaggatccatatatgctgct
gctggtgattcctgtgcatactgctgggatgtggagacaagtaagattaagacggtgttt
aagggacatttggactatctgcattccattattgctccaacgggcagcaatcagatcata
actggatcagaggatggtacagcaagaatttgggactgccgaaatggaaagtgtgttcag
gtgatatctccaaagcgagagagtctaaaggaagtttccagtgttagctgcattgctcta
gatgcaagtgagagttggctggcttgtggtagcggaaaaagtttatatgtttggaatctt
ctggcttcagaacaaatttcaaggatcagtactcctacaacttgccaagatgtagttttt
gatgacaatcatatattagcagttggagcttcatcaatgcttagtcgaatggacatgaat
ggcaagatcctatctcaaataagatgtgctcctgagtcggcattttccgtctccttgcat
cagtcgggtgtgatagtagttgctgggtatacagggctggttgatgtggtatcgcagttt
ggaagtcactcgtgcacattccgatgcacatctgtatga

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