Chenopodium quinoa (quinoa): 110683789
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Entry
110683789 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110683789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110683789
03041 Spliceosome [BR:
cqi03041
]
110683789
03009 Ribosome biogenesis [BR:
cqi03009
]
110683789
03016 Transfer RNA biogenesis [BR:
cqi03016
]
110683789
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110683789
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110683789
Spliceosome [BR:
cqi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110683789
Complex C
U4/U6.U5 tri-SnRNP related factors
110683789
Ribosome biogenesis [BR:
cqi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110683789
Transfer RNA biogenesis [BR:
cqi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110683789
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
110683789
NCBI-ProteinID:
XP_021715893
LinkDB
All DBs
Position
Unknown
AA seq
1030 aa
AA seq
DB search
MAEPPQATMAESEPPSSTTLENPNDSLTEQQTLGKRKHSESEQPLLQQNSPEKQQQQNQQ
QSQENSELPSSKRRNSTRTCVHEVAVPKDFTSDKDSTIYGTLANPSFDGPMAKTYAFTLD
PFQQVSIACLERKESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRE
LSQEFTDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYMKDRE
RGVVWEESIVFLPTEIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQHYVF
PVGGSGLYLVVDENEQFREDNFLKLQDTFVKPGNGMKNAAAKASGRIAKAGSGAKGGSDI
YKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTEEEKDIVEQVFKNAILCLNEE
DRSLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLNMPAK
TVVFTAVKKFDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMIDEQMEMNSLRDMVLG
KPAPLVSTFRLSYYSILNLMCRAEGQFTAEHVIRNSFHQFQHEKTLPEIEKKIEKLEQEA
AMLDASGESEVAEYHKLRLNLAQLETKMISEITRPERILYYLVPGRLVRIREGVTDWGWG
VVVNVVKKPPAAVGTVPRGGGYIVDTLLHCSPGSSENGSRPKPCPPRPGQKGEMHVVPVQ
LSFIAALSKLRISVPPDLRPVDARQSLLLGVQELEKRFSQGLPKLNPVKDMGIDDKEIVD
LVSQIEELEQKLFSHPMHKSQDDHQVKCFQRKAEVNYEIQLLKSKMRESQLQKFRDELKN
RSRVLKKLGHIDADGVVQLKGRAAALIDTGDELLVTELMFNGTFNDLDHHQVAALASCFV
PCDKSNEQIHLRAELAKPLQQLQDSARRIAEIQHECSLDVNVEEYVESTCRPYLMDVIYC
WSKGSNFFEVIQMTDIFEGSIIRLARRLDEFLNQLKAAATAVGETDLENKFGDASTSLRR
GIMFANSLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaccacctcaagcaacaatggcggaatcggaacctccatcatcaacaacactg
gaaaatccaaacgattcacttacagaacaacaaaccctaggaaagcgaaaacattccgaa
tccgaacaaccattacttcaacaaaactcaccagaaaaacaacaacaacaaaatcagcaa
caatctcaggaaaactcagaattaccaagctcaaaacgacgaaattcgactcgaacttgc
gtacacgaagtagcagtaccgaaagatttcacctcagacaaagattcaaccatttatgga
actcttgcaaaccctagcttcgatggtccaatggcgaaaacgtatgcttttactctcgac
ccatttcagcaagtttcaattgcttgtttagagcgtaaagaatcggttctcgtgtccgcc
cacacttccgccggcaaaaccgccgttgccgagtatgcgattgccatggcatttcgcgat
aagcagcgagtaatctacacttcgcctctcaaagcattgagcaatcagaagtacagggaa
ttgagccaggaattcactgatgttggtcttatgactggtgatgttaccatctctcctaat
gctagttgtttagtgatgacaacggagattcttcgcggtatgttgtaccggggttccgag
gtgttgaaggaggttgcttgggttatatttgatgagattcattatatgaaggatagagaa
agaggggttgtttgggaggagagtattgtgttcttgcctactgagattaagatggtgttt
ttatctgctactatgtcgaatgcaaccgagtttgctgagtggatttgtaatattcataag
cagccttgtcatgttgtttatactgatttccggcctacaccgttgcagcattacgtgttt
ccggttggagggtcggggttgtacttggtggtggatgagaatgagcagtttagagaggat
aactttttgaagcttcaggatacatttgtgaagcctggtaatgggatgaagaatgctgct
gccaaggctagtgggaggattgcgaaagctggttccggagctaaagggggttcggatata
tacaagattgtcaagatgataatggagcgcaaatttcagcctgtcattgtatttagtttc
agtagaagggagtgtgaacaacatgcaatgtccatgtcaaagctagactttaatacggaa
gaagagaaagatattgtggagcaggtttttaaaaatgcaattctctgcttgaatgaggag
gacaggagccttcctgctattgagttgatgttgccacttcttcaacgaggcattgccgtg
catcattctgggcttcttccaattattaaggaattggtggagctccttttccaagaaggg
cttgtgaaggcgctatttgccactgagacatttgcaatgggattaaatatgcctgcaaaa
acagttgtttttacagcagtgaaaaaatttgacggtgatagtcatcgttatattggatct
ggtgagtatattcagatgagtggaagagctggtcgccgtggcaaggatgatcgaggcatt
tgcattataatgattgatgagcagatggaaatgaattctttaagagatatggtgttgggt
aagccagctcctcttgtcagcacttttagattgagttactactcaatcttgaatctaatg
tgccgagctgaaggccagttcactgcggaacatgtcattagaaattcatttcaccaattc
cagcatgagaagactttgcctgaaattgaaaaaaagatagagaaacttgagcaggaagct
gccatgcttgatgcttctggagagtctgaagttgcagaataccataagctaagacttaat
ttagctcaacttgagacgaagatgatatcagagattacaaggcccgagagaattctttac
tatcttgttcctggaagactggttaggatacgtgaaggagtaactgactggggttggggt
gttgtggtcaatgtggtgaaaaagcctcctgctgctgtgggaactgttccacgtggtggg
ggctatatagttgatacactgcttcattgctcccctggttcaagtgagaatggttcaaga
cctaaaccatgtcctcctcgtcctgggcagaagggtgaaatgcatgtggttccagtgcag
ttgtcctttatagctgccctcagtaagctccggatttctgttcctcctgaccttcgacct
gttgatgccagacaaagcttacttcttggtgtacaggagctggaaaaacgtttttctcaa
ggtctcccaaagcttaatcccgtgaaggatatgggtattgacgataaggaaatcgtcgac
ttggtcagtcaaattgaggaacttgagcagaagttgttttcgcatccgatgcacaagtct
caagatgatcatcaggtcaaatgtttccaaagaaaagctgaggtgaattatgaaattcaa
ctgttgaagtcgaagatgcgtgagtctcagcttcaaaagtttcgtgatgagctgaaaaat
aggtcacgtgtcttgaagaagctgggtcatattgatgctgatggtgttgtccagttaaag
ggacgggctgccgcattgatagacaccggagacgaacttcttgttaccgagctgatgttt
aatggtacatttaatgatctggatcatcatcaagttgccgctcttgcaagttgctttgtc
ccgtgtgataaatcaaacgaacagattcatttgcgagcagaacttgcaaaacccttgcag
caactccaagacagtgccagaagaatagcagagatacaacatgaatgcagcctggatgta
aacgtggaagagtatgttgagtcaacttgcagaccctacttgatggatgtgatatactgt
tggtcaaagggatccaatttttttgaggttatacaaatgactgatatatttgagggaagt
atcataagactggcgagaagactggatgagttcttaaatcagttgaaagctgctgctact
gcagtgggagagactgacctggaaaacaagtttggagacgccagtaccagcctccgtcga
ggtattatgtttgctaactctctatacttgtag
DBGET
integrated database retrieval system
