Chenopodium quinoa (quinoa): 110685317
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Entry
110685317 CDS
T05764
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like isoform X1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110685317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110685317
03036 Chromosome and associated proteins [BR:
cqi03036
]
110685317
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110685317
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110685317
mRNA degradation factors
5'-3' decay
Decapping complex
110685317
Chromosome and associated proteins [BR:
cqi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110685317
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
EPL1
TFIIA
Motif
Other DBs
NCBI-GeneID:
110685317
NCBI-ProteinID:
XP_021717499
LinkDB
All DBs
Position
Unknown
AA seq
537 aa
AA seq
DB search
MNDNIRDRYPPGMGRGRGGMGVDIGGGGGGGKPNFQRRNYEQQQHYAQRGMMQNHHQQQH
QFQRQQQQQQHQQHFQHHQQQLQQIQQQQNQQQKQMQQQQQQQQQWLRRGQLGGITEAGV
DEVEKTVQSEAIDTSTQDWKARLKLPPPDTRFRTEDVTATKGNEFEDYFLKRELLMGIYE
KGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPT
RELALQTSQVCKELGKHLNIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGI
CVLKDCSMLIMDEADKLLSPEFQPSIEQLIQFMPTNRQILMFSATFPVTVKDFKDRYLHK
PYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKI
TELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKN
AETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYKIEQELGTEIKQIPPQIDQAIYCR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacaacattagagatcgttatcctcctggaatgggcagaggtagaggcggaatg
ggcgtagatataggcggcggaggtggtggtggaaaacctaattttcaacgtaggaattat
gaacagcagcaacattacgcgcaaagagggatgatgcagaatcatcatcagcaacaacat
cagtttcaacggcagcaacaacagcagcaacatcaacaacattttcagcatcatcagcaa
cagttgcagcagatacaacagcaacagaatcagcagcagaagcagatgcagcagcagcaa
caacaacagcagcaatggcttaggaggggtcagttagggggtataacggaggccggtgtc
gacgaggttgagaagacagtgcagtccgaagcaattgacacgagtacacaagattggaag
gcaaggttgaagttaccaccaccagacacacgctttaggacagaggatgtgacagctact
aaagggaatgaatttgaggactattttctcaagcgcgagttattgatgggtatatatgag
aagggttttgaaaggccatcccctatccaggaagaaagtattccaattgcgcttactggg
agtgatattcttgccagagcaaagaatgggacaggaaaaactgctgccttttgcattcct
gctttggaaaaaattgatcaagacaacaatgttattcaagttgtcatacttgttcctacg
agagagttggctctccagacatcacaggtttgtaaagagcttgggaagcacctgaatatt
caagttatggttaccaccggtggaaccagtttgaaggatgatattatgagattatatcag
ccagtccatttacttgtgggaactcctggccgaatattagatctggcgaagaaaggaatt
tgtgttttgaaagactgttctatgcttataatggatgaggctgataagcttttgtctccg
gaatttcagccgtctatagagcagcttatccaatttatgcctacgaatcgtcagatccta
atgttttcagctacatttcctgtcactgttaaagatttcaaagatagatatttacataag
ccttatgttattaacttgatggacgagcttaccctgaagggtataacacaattttatgct
tttgttgaagaaagacaaaaagtccactgcctgaacacccttttctccaagcttcaaatc
aaccagtcaattattttttgtaattctgtgaatcgtgttgagttgctagctaaaaaaata
acagaacttgggtattcttgtttttacattcatgcaaagatgctgcaagatcaccgcaac
agagttttccacgattttcgtaatggggcatgccgaaatcttgtgtgcactgatttattt
actaggggaatagacattcaggctgtcaatgttgttatcaatttcgacttcccaaagaat
gctgaaacctacctccatagggttggtcgatctgggaggtttggccatcttggtttagca
gtgaatttaatcacttatgaagaccgtttcaacttatataagattgagcaggaacttgga
actgaaataaagcagattcctccacaaatagatcaagctatctactgtcgttaa
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