Chenopodium quinoa (quinoa): 110685423
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Entry
110685423 CDS
T05764
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110685423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqi03021
]
110685423
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110685423
Transcription machinery [BR:
cqi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110685423
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110685423
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
110685423
NCBI-ProteinID:
XP_021717647
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MEDTDGSLSFDFEGNLDTIPNIPTASNPVIQPDPNAAPFAGAAVATGGSAPSDQTSGQGN
RRSFRQTVCRHWLRSLCMKGDSCGFLHQYDKSRMPVCRFFRLYGECREQDCVYKHTNEDI
KECNMYKLGFCPNGPDCRYRHAKQPGPPPAVDEVLQKIQQLTSYSYGVSNRFSQQRNTNY
SQQADRSQFPQGANTANQGSVPKSTATESSNIQQQLQQPHLAGQDNIQNLHSNSSSQTGR
TATPLPKGITRYFIVKSCNRENLELSVQQGVWATQRSNEAKLNEAFDTVEHVILVFSVNR
TRHFQGCAKMTSKIGETASGGNWKHAHGTAHYGRNFSVKWLKLCELSFNKTRHLRNPYNE
NLPVKISRDCQELEPSVGEQLASLLYLEPDGELMVTLVAAESKREEEKAKGVDIENGAEN
PDIVPFEDNEEEEEEEESEEEDESFGLAPGSLAIQGRGRGRGMMWPPNFPMGRGGMRPMP
GMRGFPPGMMGVDGFNYGPGPDNFPMPDPFGMGPRPFVPYSPRFSGEFTNPSPGMMFPGR
PSQPGGVHPGGGFGMMMGPGRAPFMPGGMGIGGRGGRPMGMPPIFPSQPGPPQGGNRGPK
RDIRGSGSDWGETFGSVPDQGKLQDMSGRGDDSSNQGAEKFVSRNSLTNDDSESEDEAPR
RSRHGEGKKKRRSLDGDVPALDP
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggaagacactgatggaagtttgagcttcgattttgaaggcaacctcgacactatccct
aacatccccactgcttctaatcccgtcatccaacctgatccaaatgccgcccctttcgcc
ggagccgccgtcgcaactggcggttctgccccttctgaccagacttcagggcaaggcaat
cgccgcagcttccggcaaaccgtttgccgccattggcttcgcagcctgtgtatgaagggg
gattcttgcggcttccttcaccaatacgacaagtctcggatgcccgtctgccggttcttc
agattgtatggcgagtgtcgtgagcaggattgtgtttacaagcacaccaatgaagatatt
aaagagtgcaacatgtacaaattgggtttctgtccaaatgggccagactgtcgttaccga
catgcaaagcagcctggacctccgcctgctgttgacgaagtacttcagaagatccagcaa
ctcacctcatacagttatggtgtctcaaatagattttctcaacaacggaatacaaattat
tctcagcaagcagacaggtcgcagtttccacaaggtgctaacactgcaaatcaaggttca
gtcccaaaatctacagcaacagagtcttccaacatacagcaacaattacagcagcctcat
ctggctggtcaggacaacatacaaaatcttcacagtaattcatctagtcaaacaggcagg
acagctactccacttcctaaggggataactaggtattttattgtgaagagctgcaatcgt
gaaaacttggagttatctgttcaacaaggtgtatgggctacccaaagaagcaacgaagcc
aaactgaatgaagcttttgatactgttgagcatgtaatcttagttttttctgttaaccgt
actcgacattttcagggctgtgcaaagatgacatcgaaaattggtgagactgctagtggt
ggtaactggaagcatgcacatgggacagcgcattatgggagaaatttctcagtcaaatgg
ttaaagttgtgtgagctgtctttcaacaaaacacggcatttgaggaatccttacaatgag
aatttgccagtgaagattagtagagattgccaggagcttgagccttctgttggggagcag
ctggcttccttgctttatcttgaacctgacggtgaacttatggtgactctagttgcagct
gaatccaaacgcgaagaagagaaagcaaaaggagttgacatagaaaatggagctgagaat
ccagacatagttccatttgaggacaatgaagaggaggaagaggaggaagaaagtgaagaa
gaagacgagagttttggtctggcacctgggagtcttgctattcaaggcagaggaagggga
agagggatgatgtggccaccaaattttcctatgggtcgaggaggaatgcgtcctatgcct
gggatgcggggctttcctcctggcatgatgggggtggatggtttcaattatggacctgga
cctgacaactttccaatgcctgatccttttggcatgggtcctcgtcctttcgtgccctac
agcccaaggttctccggtgaatttacaaatccttcacctggtatgatgtttcctggtcgg
ccttcacaacctggaggggtccatcctggtggtgggtttgggatgatgatgggccctggg
cgtgctccattcatgcctggaggaatgggtattggtgggagaggtggtcgaccaatgggt
atgcctcctatctttccttcccagcctggaccacctcaaggtggcaatcggggtcctaag
agggatattagaggatcaggtagtgattggggtgagacatttggatcagttccagatcaa
gggaagttgcaggatatgagtggacgtggtgatgactcatcaaatcaaggtgctgaaaaa
tttgtctctcgaaacagtctaacaaatgatgacagtgaaagtgaggatgaggctcctagg
aggtcaagacatggtgagggaaagaaaaaacgtcgaagcctggatggtgatgtgcctgct
ttagacccatga
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integrated database retrieval system
