KEGG   Chenopodium quinoa (quinoa): 110685481
Entry
110685481         CDS       T05764                                 
Name
(RefSeq) WD repeat-containing protein VIP3-like
  KO
K12602  WD repeat-containing protein 61
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110685481
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cqi03019]
    110685481
Messenger RNA biogenesis [BR:cqi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     110685481
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WDR55 EIF3I ANAPC4_WD40 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C NBCH_WD40 WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_DCAF12 eIF2A Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Ge1_WD40 Beta-prop_WDR11_1st Beta-prop_IFT140_1st Beta-prop_HPS5 CFAP43_N Beta-prop_NUP159_NUP214 Cytochrom_D1 WDR54 DUF5711 PD40
Other DBs
NCBI-GeneID: 110685481
NCBI-ProteinID: XP_021717700
UniProt: A0A803N7Y6
LinkDB
Position
Unknown
AA seq 322 aa
MKLAGLKSLESAHDDSIWATTWVPATETRPSLLLTGSLDETVRLWKADDDVVLDHTNTGH
SLGVVSVAAHPSGVIAASASLDSFVRVFDVDSNSTIATLEAPPSESWQMQFHPKGTMLAV
AGGSSTSIKVWDTATWQLAASLQIPRPESSKPNDKIATKKFVLSVAWSPDGRRLACGSMD
GTISVFDVARAKFLHHLEGHLMPVRSLIYSPNDPRVLFSGSDDAHIHMYDAEGKSLIGSM
SGHSSWVLSIDASPDGGAIASGSSDKTVKLWDLSMRAAVQSMTNHSDMVWGVAFRPPGGA
GVRACRLASVSDDKSISLYDYS
NT seq 969 nt   +upstreamnt  +downstreamnt
atgaaattagccggcttaaaatccttagaatcagcacacgacgattcaatatgggcgaca
acatgggttccggcgaccgaaacccgtccttcgctcctcctaacaggctcccttgacgaa
actgttcgcctttggaaggccgacgatgatgttgtgttagaccacactaataccggccac
agccttggcgttgtctctgttgctgctcatccttctggggttatcgccgcttcggcttcc
ctcgatagctttgttagggtttttgatgttgattccaattctactattgccacccttgag
gctccaccttctgaatcttggcaaatgcagttccaccctaagggtaccatgcttgcagtt
gctggaggaagcagcacttcaatcaaggtttgggacactgccacatggcaacttgctgca
tcactacaaatcccccgtcctgaaagtagcaaaccaaacgataaaattgccaccaagaag
tttgtcctctcggttgcttggtctcctgacgggagacgtttggcctgcggctcaatggat
ggaacaatctctgtttttgacgttgcacgcgctaagttcttacaccaccttgagggccac
ctcatgcctgttcgatcccttatctactctcccaatgaccctagagttctcttttcggga
tctgacgatgcccatatacacatgtatgatgccgaaggaaagagcttaattgggtcaatg
tcaggtcactcaagctgggttctgagtattgatgcaagcccagatggtggtgccattgca
agtggatcaagtgataaaacggtgaagctttgggatctcagcatgcgggcagctgttcag
agcatgaccaaccactctgacatggtatggggggtagcgtttcggccacctggtggggcc
ggtgtccgggcttgtcgactggccagtgtgtcagatgacaaaagtatttcactgtatgat
tattcttag

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