Chenopodium quinoa (quinoa): 110687913
Help
Entry
110687913 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110687913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110687913
03041 Spliceosome [BR:
cqi03041
]
110687913
03009 Ribosome biogenesis [BR:
cqi03009
]
110687913
03016 Transfer RNA biogenesis [BR:
cqi03016
]
110687913
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110687913
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110687913
Spliceosome [BR:
cqi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110687913
Complex C
U4/U6.U5 tri-SnRNP related factors
110687913
Ribosome biogenesis [BR:
cqi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110687913
Transfer RNA biogenesis [BR:
cqi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110687913
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
110687913
NCBI-ProteinID:
XP_021720251
UniProt:
A0A803MMF6
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MGSAKRKSIDGENPTMGSKPPPLKMMREDNNTIACFHDVSYPQGYVPPSTNSSTSTPAKE
FPFSLDPFQSEAIKCLENCESVVVSAHTSAGKTVVASYAIAMSLRNKQRVIYTSPIKALS
NQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEIAREVAWAIFDEVH
YMRDKERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTP
LQHYIFPSGGKGLYLVVDEKAKFREDSFQKALNALAPAAEGEKKRENGKWQKGVVVGKLG
EESDIFKLVKMLIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDDEKANIEPIFWSAMD
MLSDDDKKLPQVTNLLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGL
NMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKLEPSTAK
MMLKGNADSLNSAFHLSYNMLLNQLRCEDGNPENLLRDSFYQFQADRAIPDLERQAKQLK
EERDSIIIDEEESLKNYYSLFEQYKTIKKDVRDIVFSPKYCLPFLQPGRLVCIECTRTDE
DLPSFSIEDNVTWGVIINFRRIKSVSDDEGSKKPEDARYTVDVLAKCMVSREDGAKKTTK
IVPLKDSGEPIVVSVPLSQVYNVSSIRVIMSKDLLPLEARENTLKKVSEVLSRFSKDGVP
LLDPEEDMKVQSSSYRKAVRRIEALESLFDKHEVAKSPLIKEKLKTLHKKQELAAKIKSI
KRQMRTSTALAFKDELKARKRVLRRLGYVTNEDVVELKGKVASEISSADELTLTELMFSG
IFKDIKLEDMVALLSCLVWQEKLHDAQKPREELELLFVQLQDTARRVAKVQLECKVQIDV
ENFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAAKSIG
EIELESKFEDAVSMIKRDIVFAASLYL
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atgggctctgctaagaggaaatcaatagatggagaaaacccaacaatggggtctaaacca
ccacctcttaaaatgatgagagaagataacaacactattgcttgcttccatgacgtttca
taccctcaaggctatgtccctccttctaccaactcttcaacctctacccctgctaaggaa
ttccccttctcccttgacccttttcagtctgaagctatcaagtgccttgaaaattgcgag
tctgttgtggtgtcagctcatacctcagctggaaaaacagtggtggcttcatatgcaatt
gctatgtcgttgcggaacaagcaaagagtcatatatacttcccctatcaaggctcttagc
aaccagaaatatcgagaattcaaagaagaattttcagatgttggtttaatgacaggagat
gtcaccattgatcctaatgcttcttgcttggtgatgacaacagaaatctggcgaagtatg
cagtatagaggatctgaaattgcaagagaggttgcatgggcaatatttgatgaggttcac
tatatgcgtgataaggaacgaggtgtggtatgggaagagagcatagtgatggctccaaag
aactctcggtttgtcttcctatcagcaactgtacctaacgctaaggagtttgcagattgg
gttgctaaggttcaccagcaaccatgtcatattgtatatacagattatcggccaacaccg
cttcaacattatatatttccttcaggtggaaaaggcctgtacttggtggtggatgagaag
gccaaatttcgtgaagatagtttccagaaagccttgaatgctcttgcccctgctgctgag
ggtgaaaagaagagagagaatgggaagtggcaaaaaggtgtggttgttggtaagttggga
gaagaaagtgatatcttcaagctggtgaaaatgcttatacagcgtcagtatgatcctgtt
atattgtttagcttcagcaaaagagagtgtgaatttctcgccatgcagatggcaaagatg
gatttgaatggggacgatgaaaaggcgaacatagaacctattttctggagtgcgatggac
atgctgtctgatgatgacaagaagctccctcaggttacaaatctgttacctctcttaaaa
cgtgggataggagttcaccattctggcttgcttccaattctgaaggaagtaattgaaatt
ctatttcaagaagggcttatcaagtgcttgtttgcaacagagacctttagcattggtttg
aacatgcctgcaaagaccgttgtgtttacaaatgtccgtaagttcgatggagataagttt
cgatggatttctagtggagagtatatacaaatgagcggtcgtgctggtcggcgaggtatt
gatgagcgtggaatatgtattctaatggtggatgagaagcttgaaccttcaactgccaag
atgatgcttaaagggaatgctgatagtttgaacagtgcctttcatctgagctacaacatg
cttttgaatcaattgcggtgtgaagatggtaaccctgaaaatttgctccgtgactcattc
tatcagtttcaagctgatcgtgccattcctgatttggagaggcaagctaaacagcttaaa
gaggagagggattcaattattattgatgaggaagaaagcttgaagaattattactcttta
ttcgagcaatacaaaactataaagaaagatgtgcgtgatattgttttttctcccaagtat
tgcttacctttcttgcagcctggaagacttgtatgcattgaatgcacaagaactgatgaa
gatcttccatctttctccattgaggacaatgtgacttggggtgtcattataaattttcga
aggattaagagtgtttctgatgatgaaggcagtaaaaagccagaggatgcacgctacact
gtagatgttcttgcaaaatgcatggtgagcagagaggatggagcaaagaaaactactaaa
attgttccactgaaggattcaggagagcctattgtagtgtctgttccactttctcaggtt
tacaatgtgagtagcatacgtgtgattatgtccaaggatcttttgccattagaggctcga
gaaaacactttgaagaaagtatcagaagttctgtccaggttttctaaggatggagttcct
ttgctagatcctgaagaagatatgaaggttcaaagcagctcatacagaaaggctgttcgc
agaattgaagcattggaaagtctgtttgacaagcatgaagtggcaaaatctcctttgatt
aaggagaaacttaaaacgttgcataagaagcaagaacttgctgccaagataaagtctatt
aaaagacaaatgaggacgtctactgcattagcattcaaagatgagctcaaagcaaggaaa
cgagttttgaggcggcttgggtatgttaccaatgaagatgttgtggagttgaaggggaag
gtagcctctgaaattagtagtgctgatgagttgacactaacagagcttatgttcagtggc
atttttaaagacataaagttagaagatatggtggcccttttatcatgtcttgtatggcaa
gaaaaacttcacgatgctcaaaaacctagagaagaacttgagctgctctttgtacagtta
caagatacagctaggagggttgccaaagtccagcttgagtgcaaggtccaaattgatgtt
gagaattttgtgagctcattccggcctgatataatggaggcagtctatgcctgggctaaa
ggatccaaattctatgagatcatggaaattacacaggtttttgagggaagtttgatcagg
gctattaggagattggaagaagtccttcagcaactcattctcgcagctaaatctattggg
gaaatagagcttgaatctaagtttgaagacgctgtctccatgattaaaagggatattgtc
tttgctgcatcattatacttataa
DBGET
integrated database retrieval system
