Chenopodium quinoa (quinoa): 110688325
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Entry
110688325 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110688325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110688325
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110688325
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110688325
mRNA degradation factors
3'-5' decay
Ski complex
110688325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
Ski2_N
DEXQc_Suv3
ResIII
DUF1922
DUF1908
AAA_16
Motif
Other DBs
NCBI-GeneID:
110688325
NCBI-ProteinID:
XP_021720755
UniProt:
A0A803KRP6
LinkDB
All DBs
Position
Unknown
AA seq
1351 aa
AA seq
DB search
MDRVAVANDLSFRVGLTGHSAHLSIEPLPPVQSHNPLHDLPQFILPPAFPEETTESIKEY
IEEKYLTPRLDPDEFSPEKAGRDWDFDWFSKAKIPVEPSLPRTAVIPEWELPFRRQKGQE
KGIWEPQSVQVEISELNAGVEDSSALPRITGPAKDFVRGSLHSRPFHPGGLDGSQSLPRV
VPEGSLNGDWIREVLEGGPAEKIPPSFKQGLDSGDLKAYPSSWSVNECHASPKVVSDEKQ
SKLSLQFDDMFKRAWEDDFAEKEESDGIESEAESNESEIQVDKTEHEDDVPDVKLSELDQ
ILSVDSAVLDTKADVKNEEGDNQGKESWAIRESNNGIADRFHELVPDMALEFPFELDRFQ
KEAIYYLERGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFTG
KFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVV
WEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKIIRVTGTTKRPVPLEHCLFYSGE
LYRICENEKILEQGLKAAKDAYKKKNSNAARSGPTMHSGSAAGSGAANAQNRDNSHRGKQ
KHSGSRNSGNFNGTGSGNFTSGSQPNLSLRRPDASLWLQLVNKLLKKSLLPVIIFCFSKN
RCDRSADSMMSIDLTSSLEKSEIRVFCDKAFSRLKGSDRNLPQILRVQSLLRRGIGVHHA
GLLPIVKEVIEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEYRQIIPGEY
TQMAGRAGRRGLDKFGTVIIMCRDEILEERDLRHIIVGHPTKLESQFRLTYIMILQLLRV
EELKIEDMLKRSFAEFHTQKKLPEKQQLLMLKLSQPAKTIECIKGEPSIEDYYKMYTEAE
GYLNQITEGVMQSHTAQQFLVPGRVVVVKSQTSQDHLLGVVVKAPSASLKKYIVLVLKPD
LPPTMQPPTGSGAVLDIGSNKSGEGFFVLPKGKRGLDDEYCSSVTARKGTGVINIKLPYQ
GVAAGVNYEVREVDNKEFLCICNCKLKIDQVRLLEDVSSAAYSKTVQQLSEKKPSGSKYP
PALDPKKDLKLKDMELVEAYHKWDKLLQNMTENKCHGCIKLDEHMKLVKVIFKYRDEVNE
LTFQMSDKALQQMPDFHGRINVLKEIGCIDDDLVVQIKGRVACEMNSGEELICTECLFEN
QLENLEPEEAVAVMSAFVFQQKNTSEPSLTPKLSAAVQRLYDTAIRLGQLQASFQLPVDP
EEYARENLKFGLVEVVYEWAKGTEFADICELTDVPEGLIVRTIVRLDETCREFRNAAAIM
GNSALYKKMESASNAIKRDIVFAASLYITGI
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atggatagagtagcagtagcaaacgatttgtcatttcgggtcgggctcacgggtcacagt
gcccatctttccatcgaacctcttcctccggttcaatcccacaatcctcttcacgacctt
cctcaattcattcttccgcctgcatttcctgaggaaacaacagaatctattaaggaatat
atagaggaaaagtatttaacaccaagattggaccccgatgagttctcccctgaaaaagct
ggaagggactgggattttgactggttcagcaaggccaaaatacctgtggaaccatcatta
cctcggacagctgtgattcccgaatgggagctgccatttaggcgccaaaaaggacaagaa
aaaggaatttgggagcctcagtccgtacaggtggagatttcagaattaaatgcaggggtt
gaggactctagtgctttgccacgaattacagggccagcaaaggactttgtgagggggagc
cttcacagtcgcccttttcatccaggtgggttagatggatctcagtctctgcccagggtt
gttcctgagggttcactgaatggtgactggattcgcgaggttcttgagggtggtcctgcg
gaaaaaattcctccaagctttaagcaaggattggattccggtgatcttaaggcatatcct
tcttcatggagtgtgaatgagtgccacgcttctccaaaggttgtatcagatgagaagcag
agtaaactgtcactgcaatttgatgatatgttcaagagagcgtgggaagacgattttgct
gaaaaggaagagtctgatggtattgaatcagaagcagagtctaatgaatcagagatacaa
gtcgataaaactgaacatgaagatgatgttccagatgttaaattatcggaattagatcag
attttgtctgtggactctgctgtgttggatacgaaggcagatgtgaaaaatgaagaaggt
gacaatcagggtaaagagtcttgggctatccgtgaaagcaacaatggtatcgcggatcgt
tttcatgaacttgttcctgatatggctcttgagtttccgttcgaattagatagattccag
aaggaggctatctactatcttgaacgaggggaatctgtttttgtggcagctcatacatct
gctggaaagacagttgttgctgaatatgcatttgcattggcatcaaagcattgcactaga
gcagtgtacacagctccaatcaagacaatcagcaatcagaaatacagagatttcactgga
aaatttgatgttggccttctcactggcgatatcagcttgaggccagaggcgtcctgcctc
atcatgactactgaaatattgaggtcaatgttgtatagaggtgctgatatcatccgtgac
attgaatgggttatatttgatgaagtgcattatgtcaatgatgctgaaagaggtgttgtc
tgggaagaagttataataatgcttcctcgtcacattaatttcgttctcctctctgccaca
gttccaaatactattgaatttgccgattggatcggcagaacaaagcagaagattatccgt
gttactgggaccactaagagaccagtcccactggagcactgcctgttttactcaggagaa
ctctacagaatttgcgagaacgaaaaaattttagaacagggcctgaaagctgctaaagat
gcatacaagaaaaagaattccaatgcagccagaagtggccctacaatgcattcaggatct
gcagctggttctggtgcggctaatgctcagaatcgtgacaattcccatcgtgggaaacaa
aagcattctggctctcgtaattctggtaacttcaatgggacgggctcagggaactttaca
agtggaagccaacccaacttgagcttgagaagaccagatgcttctttgtggttacaactt
gtgaacaagctcttaaaaaaatcacttttaccggtaatcattttttgcttttcaaagaac
cgttgtgatcgatcagctgatagtatgatgagtatagatcttaccagtagtttggaaaag
agtgaaattcgtgttttctgtgacaaagcattttcgcggttgaagggttctgaccgaaat
ttacctcagattctccgagttcaaagtctgcttcgtaggggtattggtgtccatcatgct
gggcttctccctatcgtgaaagaagttatcgaaatgctattctgccgtggtgtaattaag
gttttattttcaacggagacatttgctatgggtgtcaatgctcctgccagaacggttgtt
tttgatactttaagaaagtttgatggaaaggaatacaggcagataattcctggggaatat
acacagatggctggtcgtgctggcagaagagggcttgataagtttggaacagttataata
atgtgccgtgatgagattctagaagaacgagatctgagacacattattgttggacatccc
accaaactcgaatctcaattccgacttacttatattatgatcttgcaattacttcgtgtt
gaagaattgaagatagaagacatgttaaagaggagctttgctgaatttcatactcaaaag
aagcttcctgaaaagcaacaacttctgatgttaaagctttcacagcccgcaaaaacaata
gaatgcataaagggtgaaccatctatcgaggattattataagatgtatacagaggctgag
ggttatttgaaccagataacagagggcgtcatgcagtctcatactgcacagcaattcctt
gtgcctggaagagtggtagttgttaagtctcaaacgtctcaggaccatttgcttggggtg
gtggtaaaagcaccgtcagccagcttgaagaagtacatagttttagttttgaaacctgat
ttacctccaacaatgcaaccccccactggcagtggtgcagtccttgacatagggagtaac
aaatctggagaaggcttctttgtgttgcccaagggaaaacgtggtttagacgatgaatac
tgttcttctgtcactgctcgcaagggtactggtgtaatcaacataaaattgccttaccag
ggggtggctgctggtgtgaattatgaggtcagagaagtggacaataaagagttcctttgc
atctgcaattgcaaattaaagattgaccaagttcggcttcttgaagatgttagctctgct
gcctattcaaaaactgttcagcagctttctgaaaagaaacccagtgggagtaaatatcct
ccagcattggatcctaagaaggatctgaagctgaaagatatggaacttgttgaagcttac
cacaaatgggacaagttattgcagaacatgactgagaacaagtgccatggatgtataaag
ttggatgaacatatgaaattagttaaagtgattttcaagtacagagatgaagtcaatgag
ttgacttttcaaatgtctgacaaagcactacaacagatgcctgactttcatggacggata
aatgttcttaaggaaattggctgtatagatgatgaccttgtagttcagatcaaaggccgt
gttgcttgtgaaatgaactccggagaggagcttatatgcactgagtgtttgtttgagaac
cagttagagaacctggaaccagaagaagcagttgctgtaatgtctgcatttgtttttcag
cagaagaatacttctgagccttctcttactcccaagctatctgctgcagtacagagatta
tatgatacagccatcagactgggccagttacaggcaagctttcaactcccagttgaccct
gaggagtatgctcgagaaaatcttaagtttggtcttgttgaagtggtttatgaatgggca
aagggcacagaatttgctgatatttgtgagctgacagatgttcctgaaggcttgatagtg
agaacaattgttcgacttgatgaaacatgtcgagaattcagaaatgctgcagctattatg
gggaactcagctctgtacaagaaaatggaatctgcttcaaatgccatcaaacgtgatatc
gtctttgcagctagcttgtacatcacaggaatctga
DBGET
integrated database retrieval system
