Chenopodium quinoa (quinoa): 110689022
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Entry
110689022 CDS
T05764
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110689022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110689022
03041 Spliceosome [BR:
cqi03041
]
110689022
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
110689022
Spliceosome [BR:
cqi03041
]
Complex B
Other components
Prp19-related factors
110689022
Complex C
110689022
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_19
TPR_15
NRDE-2
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
110689022
NCBI-ProteinID:
XP_021721464
LinkDB
All DBs
Position
Unknown
AA seq
910 aa
AA seq
DB search
MAIARELYPSEDDLPYEEEILRNPFSLRLWWRYLVARTSSPFKKRAIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLDNTFERALVTMHKMPRIWIMYLQTLIVQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLIFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
VNSERWQEASERLAGVLNDDQFFSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLPEKARDVFEEGMMTVVTVRDFSVIFDAYSQFEESML
AYKMESLDLSDEEGEDGGGDEEEEEVDIRGDVDLSMGKFEKKILKGFWLHDDNDVDLRLA
RLEHLMDRRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTRQILTYTEAVRTVDPMKAVG
KPHTLWVAFAKLYESHKDLANARVIFDKAVQVNYKAVDHLASIWCEWAEMELRHKNFKGA
LDLMRRATAVPSVEVKRRVAADGYEPVQMKLHKSLKLWTFYVDLEESLGTLESTRAVYES
ILDIRIATPQIIINYAMLLEEHKYFEDAFRVYERGVKIFKYPHVKEIWVTYLSKFVKRYG
KTKLERARELFENAVETAPGECVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPASEKL
SMYEIYIARAAEMFGVPKTREIYEQAIQSGLPDKDVITMCMKYAELEKSLGEVDRARAVY
IYASNFADPRTVPDFWNQWHEFEVQHGNEDTFREMLRIKRSAVSSFSQTHFILPELLMQK
DEVSLDALEKAGVPADEMAALERQLAPVDNDVLAKDKARTVGFVSAGVESQSDTGKRNVN
QEEIELPEESDDDEEDVEKVEIAQKDVPSAVFGGLAKKRDDPEKAEDGEEVKGADAPLGA
LERMKRRKKD
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggctatagctcgagaattgtacccttcagaagacgaccttccatacgaagaagaaatc
ctgcgcaaccccttcagcctccgtctatggtggcgctacctcgtcgcaagaacctcttct
ccattcaagaaacgcgcaatcatctacgaacgagctctcaaagctttacctggaagctac
aaactctggtatgcttatcttcgtgaacgccttgaacttgttcgtaatcttcctattaca
cattctcagtatgaaaccctagataatacttttgaacgtgctttggttactatgcataag
atgcccagaatttggattatgtatttgcaaaccctaattgttcagaaattggttactcgt
actcgtcgtactttcgatcgggctctttgtgctttgcctgttactcagcatgatcgaatt
tgggaaccctatttgatttttgtgagtcagaaggggattccgatcgagacttcgcttagg
gtttataggaggtatttgaagtatgacccatctcacattgaggattttattgagtttttg
gtgaattcggagcggtggcaggaggcgtctgagaggttggctggggttttgaatgatgat
cagttcttttcgattaaggggaagacgaagcataggctttggcttgagttgtgtgatttg
ttgactaagcatgctactgaggtttctgggttgaatgtggatgcgataattaggggtggg
attaggaagtttacggatgaggtggggcggttgtggacttcgttggcggattattatatc
aggaggaagttgccggagaaggctagggatgtgtttgaggagggtatgatgacggtggtc
actgtcagggattttagtgtgatttttgatgcgtattcacagtttgaggagagtatgctg
gcgtataagatggagagtttggatttgagtgatgaagaaggagaggatggtggtggggat
gaggaagaggaggaggttgacattaggggggatgttgacctctctatgggaaagtttgag
aagaagatcttaaagggtttttggctgcacgatgataatgatgtggatttgcggctcgct
aggttggagcatttgatggatagacgtcctgagctagctaatagtgttcttttacgtcaa
aacccacataatgtggagcaatggcatcggagagtcaagctctttgagggcaatccaact
aggcagatattgacctacactgaggcggtcaggactgtggatcctatgaaggcagtagga
aagcctcacactttgtgggtagcttttgctaagctgtatgaaagtcacaaagatcttgct
aatgctagggttatatttgacaaagcagtacaagtgaattataaagcagtggatcatctt
gctagtatttggtgtgaatgggctgagatggagttaaggcacaaaaactttaaaggagca
ctggacctgatgcggcgtgcaacagcagtgccctctgtcgaagtaaagcgtcgagttgct
gcggatggttatgaacctgtgcagatgaagctgcacaaatcattaaaattgtggacattc
tatgtagatttggaggaaagccttggtactttggagtccacccgtgctgtgtatgagagc
atattggatataagaattgctactccccaaattattataaactatgcaatgcttctagag
gagcataaatattttgaagatgcttttagggtgtatgaaagaggtgtgaagatctttaaa
tatcctcatgtgaaagagatatgggttacatatttatccaagtttgttaagaggtatgga
aagacaaagttggaacgagccagagaactctttgagaatgccgttgaaacggcacctggg
gaatgtgtaaagcctttatacctgcaatatgctaagttggaggaggactatggcttagca
aagcgtgcaatgaaggtttatgatcaagctactaaagctgttccagctagtgagaagttg
agcatgtacgagatctacatagctcgtgcagcagaaatgtttggtgtgccaaaaaccagg
gagatatatgagcaagcaattcaatctggtcttcctgacaaagatgtgataaccatgtgc
atgaagtatgctgagcttgagaaaagcctcggagaagttgaccgtgctcgtgcagtttac
atatatgcctctaattttgcagatccaagaactgttcctgatttctggaatcagtggcat
gaatttgaggtccaacatggaaatgaagacaccttcagagaaatgctccgcataaaacgt
agtgctgtttctagtttcagccagacccatttcatccttcctgaattactgatgcaaaaa
gatgaggtcagccttgatgcacttgaaaaagctggggttcctgctgatgagatggctgct
cttgaaaggcagttggctcctgtagacaatgatgttctagctaaggataaagcaaggact
gttggttttgtcagtgccggagttgaatctcaaagtgacactggcaaaagaaatgtaaac
caggaggagattgaactaccggaggagagtgatgatgatgaggaagatgtggaaaaggtc
gagattgctcaaaaggatgtgccaagtgctgtttttggtggcttggctaagaagcgggat
gaccctgagaaagctgaagatggggaggaggtgaaaggggctgatgctcctctaggtgct
cttgaaagaatgaagcgtagaaagaaagattag
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