KEGG   Chenopodium quinoa (quinoa): 110691755
Entry
110691755         CDS       T05764                                 
Name
(RefSeq) DNA ligase 1-like isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cqi  Chenopodium quinoa (quinoa)
Pathway
cqi03030  DNA replication
cqi03410  Base excision repair
cqi03420  Nucleotide excision repair
cqi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cqi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    110691755
   03410 Base excision repair
    110691755
   03420 Nucleotide excision repair
    110691755
   03430 Mismatch repair
    110691755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cqi03032]
    110691755
   03400 DNA repair and recombination proteins [BR:cqi03400]
    110691755
Enzymes [BR:cqi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     110691755
    6.5.1.6  DNA ligase (ATP or NAD+)
     110691755
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     110691755
DNA replication proteins [BR:cqi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    110691755
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     110691755
DNA repair and recombination proteins [BR:cqi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     110691755
   NER (nucleotide excision repair)
    Other NER factors
     110691755
   MMR (mismatch excision repair)
    Other MMR factors
     110691755
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 110691755
NCBI-ProteinID: XP_021724390
LinkDB
Position
Unknown
AA seq 819 aa
MFIVVRPSSRHFFPPSSSKILRHCRMLKISPLSSSCFLTLRPLNTTIFSSTFSLLNFPIN
FKLRAMSSTPPSSTPPSSTPPSSSSVLAAMMDKARESSKKKTPSPNKKNPKTSSSSPKKR
KTLDPSPPIPENPNPTSISVEKPQESNSVVEMGTQKPELKNPFAKKPKVDLNVDEFVANL
KIKPAKFEPNLAAWWGDGDKVPFLFLARAFDMIKGESGRIVITDITCNVLRTVIAKTPDD
LLEVVYLLANKIAPAHQGLELGIGDATLIKALAEACGATEANVKKLYKDLGDLGDVAKEI
RSKQSMMRQPPPLTITKVFNTFQLIAKASGKDSQERKKNYIKSLIVAAKDCEPVYLMRLL
QAKLRISLAEKTLLVALGQAAVYSEEHSKPPSDIQSPLEEAGKIVKQVYSVVPVYDKIIP
ALLSDGVWNLSKTCNFTPGVPIGPMLAKPTNGVSEIIDKFQDMVFTCEYKYDGERAQIHF
MEDGSVEIYSRNAERNTEKFPDVVTALPRFKKPSVKSFILDCEIVAYDREKQKILPFQIL
STRARKNVKMSEIKVDVCVFAFDILYLNGMPLLQEQLNVRRKHLYDSFEEDCGYFQFATI
LTSNDIEEIQKFLEASVNASCEGLIIKTLEKEATYEPSKRSNNWLKLKKDYMDSSVGDSL
DLVPIGAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAVLEERSSSLRSKVI
SIPKTYFRYGDNLKPDVWFEPSEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVR
LREDKAPEDATSSDQVAEMYRSQANTPHRKMKDDLEEED
NT seq 2460 nt   +upstreamnt  +downstreamnt
atgttcatagtcgtacggcctagttcccgccattttttcccaccttcatcctcaaaaatc
cttcgacattgtcgaatgttgaaaatctctcctctttcttcctcttgctttctcactctt
cgcccactcaacaccaccattttctcctccactttctctctcctcaatttccctataaat
ttcaagcttcgagccatgtcttctactcctccttcttctactccaccctcttctactcct
ccttcttcttcttccgttttggcagctatgatggacaaagctcgagaatcttctaagaag
aaaaccccatcccctaataaaaaaaaccccaaaacttcttcttcttccccaaagaaacga
aaaaccctagacccatctcccccaattccagaaaaccctaaccccacttcgatttctgtt
gagaaaccccaagaatccaattcagtggtagaaatgggtacccaaaagcctgaattgaaa
aacccttttgccaagaaacctaaggttgatcttaatgtggatgaatttgttgctaatttg
aagattaaaccggcgaaattcgaacccaatttggcggcgtggtggggggatggtgataaa
gttccttttctttttcttgctagggcatttgatatgattaaaggcgaatccggtaggatt
gtgattactgatattacttgtaatgtgttgaggactgtcattgcaaagactcctgatgat
cttttggaggttgtttatcttttggccaacaagattgctcctgctcatcaaggtttggag
ctcggaatcggtgatgctacgcttattaaggcgcttgccgaggcttgtggagctactgaa
gcaaatgttaagaagttgtacaaggatttaggtgatctcggggatgtcgccaaagaaatc
cgttctaagcaaagtatgatgcggcaacctccaccactgaccattaccaaagtatttaat
acattccagctcattgccaaggcatccgggaaggatagtcaagaaaggaaaaagaattat
atcaagtcacttattgtggctgccaaagattgtgaacctgtttacttgatgcggctactt
caggcaaaattgcggattagtttggcagagaaaactcttcttgttgccctgggacaagct
gctgtgtattccgaagagcattcaaagcccccgtcagatattcaatctccactagaagaa
gctggaaagattgtcaaacaagtatactctgtggttcctgtgtatgataaaattatccct
gcccttctcagtgatggtgtatggaatctatcaaagacctgtaactttacaccaggtgtt
cctataggacctatgttagcgaagccaacaaatggagtttcagaaattatagataagttt
caagatatggtatttacttgtgaatacaagtatgatggagaacgtgctcaaattcatttc
atggaagatggttctgttgagatatacagccgaaatgctgaaaggaacacggagaaattc
cctgatgtcgttactgctcttccaagattcaagaagccatcagtaaagtcttttattttg
gactgtgaaattgttgcttatgatcgtgagaagcagaagattcttccttttcagatactt
agcacccgagctcgcaaaaatgtcaaaatgagtgagataaaggttgatgtttgtgtcttc
gcttttgacatattgtatttgaatggaatgccacttctccaggaacagcttaatgttcgt
agaaagcatctttatgattcatttgaggaagattgtggatattttcagtttgcgacaata
ctcacatctaatgatatcgaggaaatacagaagtttcttgaagcatctgtcaatgcgagt
tgtgaggggttgattatcaaaacattggaaaaagaggccacctatgagccttcaaagaga
tctaataactggcttaaattgaaaaaggattacatggacagcagtgttggagactctctg
gatctggtgcctattggagcattccatggccgtgggaaacgaacaggtgtttatggtgct
tttcttcttgcttgctatgacagtaacaatgaagagttccagagcatatgcaagattggt
actggtttttctgaggcagtgcttgaggaacgttcttccagtcttcgatctaaagtgatt
tcgattcctaagacatactttcggtatggagataacctgaaaccggatgtctggtttgag
ccctctgaggtatgggaggtcaaagcagctgacttgactattagtcctgtccaccgtgct
gcagttggtattgtagattctgacaagggaatttcactccgatttccacgtttggttcgt
cttagagaagacaaagctccagaggacgccacatcatctgatcaggtggcagaaatgtac
agatctcaagcaaacactccacaccgcaaaatgaaagatgatttggaagaagaggactga

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