Chenopodium quinoa (quinoa): 110694503
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Entry
110694503 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110694503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110694503
03012 Translation factors [BR:
cqi03012
]
110694503
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110694503
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110694503
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110694503
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
AAA_16
AAA_30
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
110694503
NCBI-ProteinID:
XP_021727385
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MPCSSPFFHGYLRTTSHLVMSLKPSRNLHNISPRPFSLLQFGKQKSFKTLAFRPLQWRPI
ASCRVSAVGGSRRSFELLQRRNPNLYQQTKEFGRFAYDDYSEDESDREHDSGKQLQSSTL
DNIDEWRWKLSMLLQNKDEQEVVSRERKDRRDFDQLSAMATRMGLHSRQYSKVVVFSKVP
LANYRHDLDDKRPQREVVLSYDLQKDVDLLLKRHLSEHSLNKDAFQNHSMSRNTSSLGKQ
GYNHLEPTAQMSAAKEKMLREKSLRLRIQQREWQESSEGLKMLEFRRSLPAYKERDALLK
AISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSLICTQPRRISAMAVSERVAA
ERGEQLGESVGYKIRLEGIKGRDTGLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGM
NEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPMLHIPGFTYPVRAHYLENI
LETTGYRLTPYNQIDDYGQEKVWKMQKQTMRKRKTQIASAVEDTLEAADYNGYSHRTQDS
LSCWNPDSIGFNLIEHVLSHICKNERPGAVLVFMTGWEDINSLKDQLQAHPLLGDPSRVL
LLACHGSMASTEQRLIFDRPPEGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDAL
NNTPCLLPTWISKAAARQRRGRAGRVQSGECYHLYPKCVYDAFSDYQLPELLRTPLQSLC
LQIKSLDLGGISEFLSKALQPPEPLSVQNAVDFLKIIGALDENENLTVLGQNLSVLPVEP
KLGKMLILGAMFKCLDPVMTVVAGLSVRDPFMTPFDKKDLAESAKAQFSGREFSDHIALI
RAYEGWKDAEKQQSGYEYCWRNFLSAQTFKAIDSLRKQFFSLLKDTGLVGLDNESQNKWS
HDEHLVRAIICAGLFPGVCSVVNKERSIMLKTMEDGQVLLYSNSVNAQEPKIPYPWLVFN
EKIKVNSVFLRDSTAVSDSVLLLFGGDISRGAQDGHLKMLGGYLEFFMKPGLADIYLCLK
RELEELIHYKLLEPKLDIHRYVDLLSAIRLLISEDQCEGRFVFGRQLPVPSRKGAKATSV
HGDKKSGDDNSKNQLQTLLAKAGHEAPAYKTRQLRNNQFRATVDFNGLEFVGQPRNNKKQ
AEKDAAAEAVKWLMGDTPSFGGDIDHLSLFMKKSKSNKKYGKGT
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgccctgctcttctcccttctttcatggctacctccgcacaacttcacacctcgtcatg
tcccttaaaccctctagaaacctccacaacatttctccaagacctttctctctccttcaa
tttgggaaacaaaaatcctttaaaaccctagctttcaggcctcttcaatggcgcccgatt
gcttcttgtagggtctcggctgttggaggttctcgaaggtcttttgagttgttgcagaga
cgcaacccgaatttgtatcagcaaactaaagagtttgggaggtttgcgtatgatgattat
tccgaagacgagtccgaccgagaacatgattctggaaaacaattacaatcttcaacactt
gacaacattgacgagtggagatggaaattgtccatgcttcttcaaaataaagatgaacaa
gaagtggtgtctagagagagaaaggacagacgtgactttgatcaactttctgcaatggca
accagaatgggtttgcacagccgtcaatattccaaagtggttgtatttagtaaagttccc
ttggcaaattatcgccatgacctggatgataagcggccacaaagggaggtggtacttagt
tatgatctgcaaaaggatgtagatcttcttttgaagaggcacctgtctgaacattccctt
aataaagatgcttttcaaaatcattccatgtcaagaaatacttccagtctgggtaagcag
ggatacaaccatcttgaacccacagcgcagatgagtgctgcaaaagagaaaatgcttcgg
gagaaaagtttgcgactccggattcagcagcgagagtggcaggaatcatcggagggtttg
aagatgctagaatttcgaagaagtctacctgcatacaaagagagggatgctttattgaag
gccatctcagaaaatcaggtagtagtcgtctccggtgaaactggttgtggtaaaacaact
caacttcctcaatacattttagagtctgaaattgaagctgctcgtggagctagttgtagc
ctcatctgcacacaaccaagaagaatatcagctatggctgtttcagagagggttgctgct
gaacgaggggaacaacttggagaatcagttggctacaaaattagattggaggggattaaa
ggaagggatacaggcctcctcttctgtactactggtatactgttgaggagactgcttgtt
gacagaaatttaaggggtgtaactcatgtcattgttgatgaaattcatgaacgtggcatg
aatgaagattttctcctgattgtcttgaaagatcttctaccacgccggccagatttgagg
ctgattttgatgagcgcaaccctgaatgctgagctattttcctcttactttggtggagct
cctatgctacatattcctggtttcacatatcctgtacgagcacactacctggagaatatc
ttggaaactacaggatataggttgaccccctataaccagattgatgattatggtcaagaa
aaggtatggaaaatgcagaaacaaaccatgaggaagagaaagacacaaattgcatcagca
gtagaggatacactagaagctgctgattataatgggtatagtcatcggactcaagattca
ttgtcctgctggaacccagattcgattggttttaatcttattgagcatgtactatcccat
atatgtaagaatgaaagacctggtgcggtcttagtttttatgactggttgggaggacatt
aattctttgaaggaccagctccaagctcatcctttgcttggagatccgagcagggttttg
ttgcttgcttgccatggttccatggctagtactgaacagaggttgatatttgataggcca
ccagaaggagtgaggaaaatagtacttgcaacaaacatggcagagactagtatcaccata
aatgatgtggtctttgttgtcgattgtggtaaggcaaaagagacatcatatgatgcactg
aataacaccccctgcttgctaccaacctggatctcaaaagctgctgctcggcagagaaga
ggtagagctggtcgtgttcagtccggggagtgttaccatctttaccccaaatgtgtctat
gatgctttcagtgattatcagttgccagaacttttgaggacacccttacagtccctctgt
cttcagataaaaagtttagatcttggtggtatttctgagtttctatcgaaggctttgcaa
ccacctgagccattatcggttcaaaatgctgttgattttttgaaaatcattggagcattg
gacgaaaacgaaaatcttactgtgcttggtcaaaacttgtctgtgcttcctgtggagccc
aagcttgggaagatgctaatattgggggctatgttcaaatgcttagacccagtaatgact
gttgttgctggtttaagtgttagagaccccttcatgactccatttgacaagaaggatctt
gctgagtcagctaaggctcagttctccggtcgtgagttcagtgaccatattgcccttatt
cgagcttatgaaggatggaaagatgctgaaaaacaacaatctggttatgaatactgttgg
agaaattttttgtctgcccagacatttaaagctattgattccctgaggaagcagttcttt
tcattacttaaagatacaggtcttgttggccttgataatgaaagtcaaaataagtggagc
catgacgagcatcttgttcgagcaatcatctgtgctggtcttttccctggtgtttgttcc
gttgttaataaagagagatcaataatgctgaaaacaatggaagatggacaggttcttttg
tattcgaattcagtgaatgcgcaagagccaaaaataccatatccatggctagtcttcaat
gagaagataaaggtcaattctgttttcctgagggattcaacagcagtttcagattctgtg
ttgttactgtttggaggagacatttctaggggtgcacaggatggacacctaaaaatgctg
ggaggatacttagagttctttatgaaacctggcttagcagacatctacctgtgcttgaaa
agagaacttgaggagctaattcattataagctcttggagcccaagttggatatacataga
tatgtggatcttttatctgcaataagattattgatatcagaagaccaatgtgagggtaga
tttgtttttggtcgtcaattgccagtaccgtcaagaaagggagctaaagcgacaagtgtt
catggtgataaaaaaagtggtgatgataattccaaaaatcaattgcaaactttgcttgca
aaggcaggacatgaagcacctgcttataagacgagacaactgagaaacaaccaatttcgc
gctactgtagatttcaatggcctggagtttgttggccaacctcgtaacaataagaagcaa
gcagaaaaagatgctgctgcggaggccgtaaaatggttgatgggtgataccccttcattc
gggggagatattgaccatttgtcattgttcatgaaaaaaagcaaaagcaataaaaaatat
ggcaaaggaacatag
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