Chenopodium quinoa (quinoa): 110694639
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Entry
110694639 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110694639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110694639
03012 Translation factors [BR:
cqi03012
]
110694639
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110694639
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110694639
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110694639
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
OB_NTP_bind
R3H
HA2_C
HA2_N
ATPase
AAA_22
AAA_19
Ank_2
nSTAND3
Ank_5
Rad17
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
110694639
NCBI-ProteinID:
XP_021727491
LinkDB
All DBs
Position
Unknown
AA seq
1185 aa
AA seq
DB search
MTKSSKKRQKYGSLFAPEHTAGVDEIVRIKIHNILEQFRSSHDQVYTFEANMTNHECAVV
HQESKKMGMISKSSGKGKQRRVAVFKSKPKLECSEQRENPVITFSDESKRVLNDLFIRYP
PGEDEVGKEYSNGPTDNNNNPRSRGKRENIFCKPLMTKDEIEKQVELLTSKIQQKHHLQE
ISKKRSKLPIATFQDVITSTILTHQVVLISGETGCGKTTQVPQYLLDSMWARGEACKIIC
TQPRRISAMSVADRISHERGENIGESVGYKIRMDTKGGRNSSIVFCTNGIMLRVLVAGGS
NGSQPGAVDLSQISHIIVDEIHERDRYSDFMLAILRDLLPTYPHLRMVLMSATLDAERFS
HYFGGCPVIRVPGFTHPVKTFYLEEILSILRTPDKNHLLNSSLSSQVNEEGSLSEQSRLA
LDEAIEMSSSNEEFDTLLELISSDGTSKVLNYQHYLTGVSPLMVFAGKGRVGDLCTLLSL
GADCHLQARDGSTALDWAKREDQSEAVEIIMKHMVDSSSSSVEEQQLLEKYMSTTNPDFI
DVVLIEKLLRKICMESEDGAILVFLPGWEDINRTRETLLANPFFKDPHKFAIFSLHSMVP
SAEQKKVFNRPPVGCRKIILSTNIAETAITIDDVVYVLDSGRMKEKSYDPYINVSTLQSS
WTSKASAKQREGRAGRCQPGVCYHLYSKLRAVSFLDFQVPEIRRMPIEELCLQVKLLDPN
CKVEDFLKKTLDPPVSETIKNAITVLQEIGALSNDEGLTELGRKLGSLPVHPLTSKMLFF
AILLNCLDPALTLACAADYRDPFTLPMLPNEKKRAVAAKAELASLYGGNSDQLAIVAAFD
CWRNARKMGQESRFCSEYFVSSSIMHMLSGMRNQLANELTRAGCIPDDISSCSMNAREPG
IIRAVIVAGMYPMVGRLHPPVRRGKRLTVETANSGYDRVLLHPQSMNSKLYMKNTDELPL
LVYDEVTRVDGSLHTRNTTIISPIPLLLLATEIVVAPARDTGDDDSGSDAAGDEDSDEGE
MECLEKKNEKPEDKVMSSPENAVTLIVDRWLPFVSTALEVAQIYCLRERLSAAILFKVTY
PKKVLPPALGTSIYAVACILAYDGMTGVSILKESVDTLTSMVHNTGIGNSSAEQNKANPA
AKSFLISLFSYSTKYHESSSQPVQVQAKKHSSKRRRGNKSGQGGP
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaatcatccaaaaagaggcagaagtacggctcattattcgcaccggagcatact
gccggcgtcgatgaaattgtccgcattaaaattcacaatattctcgaacagtttcgttct
tctcatgatcaagtatatacttttgaagctaacatgactaaccatgaatgtgctgtggtt
catcaagagtccaaaaaaatgggcatgatttcaaaaagttctgggaaagggaaacaacgg
cgtgttgcagtattcaaaagcaagccaaagttagaatgctcagagcaaagggaaaatcct
gtgatcacattctcagatgaatctaaaagggttttgaatgacctttttattcgttatcca
cctggtgaggatgaagttggaaaagaatattctaatgggcccactgataataacaataat
cctaggtcacggggtaaaagagagaatatattctgtaagcctttaatgaccaaggatgaa
atagaaaagcaggtggagctgctcacgagcaagatacagcaaaaacatcacttgcaagag
atatctaagaaaaggtctaagcttcctattgcaactttccaggatgttattacgtcaaca
atcttaactcatcaggttgtgctcatatctggagagactggttgtgggaagactacacag
gttcctcaatatcttttagattccatgtgggctaggggtgaggcttgtaaaataatctgt
acacaaccacgacgtatttcggctatgtcagttgcggacagaatttctcatgaaagagga
gaaaatattggagaaagtgttggatacaagataagaatggataccaaaggtggaagaaat
tcatctattgtattttgcacaaacggaatcatgctgagggtgcttgttgctggtggctct
aatggatcccaaccaggagctgtagatctttctcagatctcccacattattgtggatgag
attcatgaaagggatcgatactctgactttatgcttgcgatcctcagagacttgcttcca
acctatccacatctacgcatggtacttatgagtgctacacttgatgctgaaaggttttct
cattattttggaggctgtccagttatccgtgtgcccggattcactcatcctgtcaaaact
ttttacttggaggaaattctgtccatattgagaactccagacaagaaccatcttcttaac
tctagtttgtctagtcaagtgaatgaagagggcagcttgagtgagcaatctcgtttggca
ctagatgaggcgattgagatgagtagttcaaatgaagaatttgatactctcctagaattg
atttcttcagatggaacatccaaagttctgaattaccagcattatttaactggagtgtcc
ccgttaatggtatttgctggtaagggaagagttggtgatctttgtacacttctttcctta
ggtgcagattgccatctgcaggcccgtgatgggagcactgctttagattgggctaagcgt
gaagatcaatctgaagctgtagaaatcataatgaaacacatggttgatagctcttcaagc
tcagtggaagaacagcagttgcttgaaaaatacatgtcaactactaatcctgattttatt
gatgttgtcttaattgagaagttgttgaggaagatatgcatggagtcagaggatggagct
attcttgtttttcttccaggatgggaagatataaataggactcgggagactttattggct
aatccatttttcaaggacccccataagtttgcaattttctctcttcactctatggttcca
tcagctgagcaaaagaaagtttttaatcggccacctgtaggttgtcgtaaaattatcctt
tcgactaatatagccgagactgccatcaccattgatgatgttgtctacgtccttgatagt
ggtcgaatgaaggagaaaagttatgatccatatattaatgtgtcaaccctgcaatcttct
tggacttcaaaggcaagtgcaaaacaacgagaggggcgtgcaggccgttgccagcctggc
gtctgttatcatctctattcaaaactacgagcagtctcctttctggatttccaggtgcct
gaaataaggagaatgccaatagaggaactatgtttgcaggtcaagttgcttgatccgaat
tgcaaagtagaggattttttgaagaaaacactagatcctccagtatctgagacaataaaa
aatgctattactgttctacaagaaattggcgcgttgtcaaatgatgagggattgacagaa
ttaggaaggaaactgggttcgttgcctgtgcatccattaaccagcaagatgctattcttt
gcgatattgttgaattgcctggatcctgccttgacgcttgcttgtgcagctgattataga
gaccccttcactttacctatgttacccaatgaaaagaaaagagcagttgcagcaaaagca
gagcttgcgtcattgtatggaggaaatagtgatcaattggcgattgttgcagcatttgac
tgctggaggaatgcgaggaaaatgggtcaagaatcacggttttgttctgaatattttgtg
tcctcgagcattatgcatatgctgtctggtatgcgtaatcaacttgcaaatgagttaacc
agggctgggtgtataccagatgacatatcaagctgtagtatgaatgccagggagccgggc
ataattcgtgcagttattgtggctggcatgtacccaatggtgggaaggttgcatccacct
gttaggaggggtaaaaggctgactgtggagactgctaatagtggttatgatagagttcta
ttacacccacaatcaatgaactcaaagttatatatgaagaatactgatgagctacctcta
ctcgtatatgatgaggtaactagagtagatgggtctttgcacacaaggaacactactatt
atcagtccaattcctttattattacttgcaactgaaattgttgtggcacctgcaagggac
actggtgatgatgatagtggaagtgatgctgctggtgatgaagatagtgatgaaggtgag
atggaatgccttgaaaagaaaaatgaaaaaccagaagacaaggtcatgtcatcacctgaa
aatgctgttacattaattgttgatcgctggctgcccttcgtatcaacagcccttgaagtt
gctcagatttactgtttgagagagcggttgtctgcggctatccttttcaaagtaacatat
ccaaaaaaggttcttccgccagctctgggaacatccatttatgcagttgcttgtattctt
gcatatgatgggatgacgggagtttcaatcctcaaggaatctgtggacactttgacttca
atggtacataatactggaattggtaattcatctgcagagcagaataaggcaaatcctgct
gcaaaaagtttcctcatatctctattcagctatagtactaaataccatgaatcttcatct
cagcctgtgcaagtgcaagcaaagaaacactcatcaaaacgacgacgtggcaataagtcc
ggccaaggagggccgtaa
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integrated database retrieval system
