Chenopodium quinoa (quinoa): 110697987
Help
Entry
110697987 CDS
T05764
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03020
RNA polymerase
cqi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110697987
09124 Replication and repair
03420 Nucleotide excision repair
110697987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqi03021
]
110697987
03400 DNA repair and recombination proteins [BR:
cqi03400
]
110697987
Enzymes [BR:
cqi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110697987
Transcription machinery [BR:
cqi03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110697987
DNA repair and recombination proteins [BR:
cqi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110697987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_3
RNA_pol_Rpb1_7
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
110697987
NCBI-ProteinID:
XP_021731077
LinkDB
All DBs
Position
Unknown
AA seq
1841 aa
AA seq
DB search
MDTRFPYSPAEVSKVHLIQFGILSPDEIRQMSVVQVEFSETTERGKPKPGGLSDMRLGTI
DRKLKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCYNCSKILADEEDHK
FKQALKIRNPKNRLKKILEACKNKRKCEGGDSMDVQDQDDEEPAKKSRGGCGAQQPTFTI
EGMKIIAEYKNTKKKSDEQEQLPEPAERKQQLTAEKVLSVLKRISDEDCQLMGFSPRYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIIS
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVDYGPHPPPGKTGAKYIIR
DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPQPAILKPRPIWTGKQVFNLIIPKQIN
LVRFSAWHQETETGFLTPGDTRVLIEKGELLSGTLCKKTLGSSSGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINVTISQAKNEVKNLIRSAQEKQL
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQRSLSETNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVGRTLPHFTKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKSEFEATYRYEFDADNWEPDYMLKEHVDDLRTIREFRNVFDAEVQKLEVDRCQ
LATDIATTGDNSWPLPVNLKRLLWNAQKTFKVDMRQKSDMHPMEIVEAVDKLQERLKVVP
GDDFLSKEAQKNATLFFNILLRSTLASKRVLREFKLNREAFDWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLN
PEISKTKERAKNVQCILEYTCLRSVTHATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV
SPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFSDDMTCIFTDDNAEKLILRIRIV
NDEGQKGDLEDDSAEDDVFLKKVAGSMLTEMALKGIPDINKVFIKQSKVNKFDEEKGFKA
ETEWMLDTEGVNLLAVMCHEEVDSTRTTSNHLIEVMEVLGIEAVRKALLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDY
LRGVTENIMLGQLAPIGTGGCSLYLNEEMLQHAIEVHLPSYVEGLEFGMTPARSPISGTP
YHESMMSPSYLLSPNIRHSPINDASFSPFVGGMAFSPASSPAYLSPNSPGYSPTSPGYSP
TSPGYSPTSPGYSPTSPTYSPGSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPSAKYS
PSLAYSPSSPRISPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPSYSPSSPYGSGPSPDY
SPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSDKDDKSKR
NT seq
5526 nt
NT seq
+upstream
nt +downstream
nt
atggatactagatttccgtattcaccagcagaggtttcgaaagttcatttgattcagttc
ggaattctgagtccggatgaaattcggcaaatgtcggtggtgcaagtggagtttagtgag
acgacggagagagggaagccgaaaccggggggtttgagtgatatgaggctcgggacgatt
gataggaagttgaagtgtgatacatgtacagctaacatggcggaatgtcctggtcatttt
ggacatcttgagcttgctaagccaatgtttcatattgggtttttgaagactgtacttagt
attatgcgttgtgtttgctacaattgctccaagattcttgccgatgaggaagaccacaaa
tttaagcaagcattgaaaattagaaatccgaaaaaccggttgaagaaaatattggaggcc
tgtaaaaacaaaaggaaatgtgaaggaggtgattcaatggatgtacaagatcaggatgat
gaagagcctgccaagaagagtcgtggtggctgtggtgcgcaacagccaaccttcactatt
gaaggtatgaaaattatagctgagtacaagaatactaagaagaaaagtgatgagcaggaa
cagcttcctgagcctgctgagagaaagcagcagcttactgctgaaaaggtgcttagtgtt
ctgaaaagaataagtgatgaagactgtcaattgatgggtttcagtcccagatatgctcgc
cctgactggatgattcttcaagttcttcctattcctccacctcctgtgagaccatctgtg
atgatggatacctcttctaggagtgaggatgatttgacccatcaattagctatgatcatt
cgtcataacgacaatctgagaagacaagagaggaatggtgcgcctgcacatatcatctct
gaatttgcacagttgctgcagtttcatattgctacgtactttgacaatgagctgcctgga
cagccaagagctacacaacgatcaggtagaccaatcaaatcgatatgtacaaggctgaaa
gccaaagaaggtcgtataagaggcaatttgatgggaaaacgagtggacttctcagctcgt
actgtcattactcctgatccaaatataaacattgacgaattgggtgttccctggagtata
gcgttaaatctcacatatccggagactgtgactccttataatcttgaaaggctgaaagaa
cttgttgactatggtccacatcctcctcctggtaaaactggagctaagtacattatcagg
gatgatggtcagaggcttgatctccgttatttgaagaagagtagtgatcatcatttggag
ctggggtacaaggttgaacgacatttgaatgatggggactttgtacttttcaatcgacag
cccagtctccataaaatgtccattatgggtcaccgaataaagatcatgccctattctaca
tttagattgaacttgtctgttacgtcaccttacaatgctgattttgatggtgatgaaatg
aacatgcatgttcctcagtcttttgagactcgagcagaagttcttgagctaatgatggtt
ccaaaatgtatcgtctccccacaagccaacaggcctgttatgggaatcgtgcaggatacc
ctattaggttgccgtaaagtcacaaagagggataccttcatagaaaaggatgtttttatg
aatattcttatgtggtgggaggattttgatgggaaagttcctcagccggctatcttgaag
cccaggcctatatggactggaaagcaagtattcaatcttatcataccaaagcagataaat
ctcgttagattttctgcgtggcaccaggagacagaaacaggttttcttactccaggggat
actcgtgtcctgatagagaaaggagaactactatctggaacactgtgtaagaagaccctt
gggtcatccagtgggagtttgattcatgttatctgggaagaagttgggccagatgctgct
cgtaaatttttggggcatacccagtggcttgttaattactggctattgcagaatggtttt
agtattgggataggagatacaattgctgatgcatcaaccatggagaccatcaatgtgacc
atatcacaagctaaaaatgaagtgaaaaacctgattagatctgctcaagaaaagcagttg
gagcctgaacctggacgcacgatgatggaatcatttgaaaacagagtcaatcaggttttg
aataaagctcgtgatgatgctggaagtagtgctcagaggagtctatctgagacaaacaac
ctaaaggctatggttactgctgggtcaaaaggaagttttattaacatatcccagatgact
gcctgtgtgggacagcaaaatgttgaaggcaaacggataccttttggatttgttggtcga
acattacctcatttcacaaaggatgattttgggccagaaagtcgtgggtttgtggaaaat
tcatacctgagaggattaactccccaggagttctttttccatgctatgggtggtagagaa
ggtctaattgatactgctgttaaaacttctgagactggctacatacaaagaaggctagtt
aaggctatggaggatatcatggtcaagtatgatggtactgtgaggaattctcttggagat
gttattcagtttctttatggtgaagatggcatggatgctgtttggatagaatcccagaag
ttggattccctgaaaatgaagaagtcagaatttgaggcaacatacagatatgagtttgat
gctgataactgggagccagattatatgttgaaagagcatgtggatgatctgagaaccatt
cgtgagttccgtaatgtgttcgatgcggaggttcaaaaacttgaagttgatagatgtcaa
cttgcgactgatattgctaccacaggagataactcttggccattacctgtgaatcttaag
aggctgttatggaatgctcaaaagacattcaaggttgacatgcggcaaaagtctgatatg
cacccaatggaaattgtggaagcagtagataagcttcaggaaaggttgaaagttgttcct
ggtgatgactttttgagtaaagaggctcagaagaatgccacactcttcttcaatatcttg
cttcgtagtacacttgccagcaaacgtgtcttgagggagttcaagcttaaccgtgaagca
tttgattgggttattggtgaaatagagtctcggtttttgcagtcattggtagctcctggg
gaaatgataggctgtgttgctgcccaatcaattggtgagcctgccactcagatgaccctt
aacacttttcactttgctggtgttagtgccaagaatgtcactcttggtgttccaaggctg
agggagatcatcaacgtggcaaagaaaattaaaactccttctctatcagtcttcttaaat
cctgaaattagcaagacaaaggagagggcgaaaaatgtgcaatgtatcttagaatataca
tgcctgcgaagtgtgactcatgccactgaagtgtggtacgatccagatcctatgagcact
atcattgaagaggatgttgactttgtcaggtcttactatgaaatgccggatgaagaggtt
tccccagataaaatttctccttggttgcttcgtatagaattgaaccgtgaaatgatggtg
gataaaaagttgagcatggctgatattgcggaaaaaatcaacttggaattcagtgacgac
atgacatgtatctttactgatgacaatgctgaaaagttgatccttcgtatacgtattgtg
aatgatgaaggtcagaagggtgacctggaggatgattctgcagaggatgatgtattcctt
aagaaggttgctggtagtatgttgactgagatggcactgaaaggaatcccagatatcaac
aaggtgttcatcaaacagagtaaagtaaataaatttgacgaggagaaaggttttaaggct
gaaaccgagtggatgttggatactgaaggtgtcaatcttcttgctgttatgtgtcatgaa
gaagttgattctaccaggacaacgagtaatcatttgattgaagttatggaggttcttgga
attgaggctgttcgtaaggccttgctagatgagttgcgggttgttatttcttttgatgga
tcgtatgtgaattaccgccatttggccatattgtgtgatacaatgacatatcgtggacat
ttgatggctattactcgtcatggtatcaatcggaatgatactggccctttgatgagatgt
tcatttgaagaaacagtggatatccttcttgatgctgctgtatatgcagaatcagattat
ttgaggggtgtaacagaaaatatcatgttgggacagctagcaccaattggaactggtggc
tgttcattatatcttaatgaggaaatgttgcagcatgctattgaagtccatcttccaagt
tatgtggaaggcttggaatttgggatgacacctgctcggtcacccatttccggaacacct
taccatgagagtatgatgtctcctagctacttgctcagcccaaatatccgacattcgccc
attaatgatgcttcattttctccatttgttggtggcatggccttctctcctgcttcatct
cctgcttatctctcaccaaattcgcctggatatagcccaacttctcctggatatagccca
acttctccaggatatagtccaacctctcctggatatagccctacttccccgacttacagt
cctgggtctcctggctatagtcctacaagcccagcatattcacccaccagcccatcttac
agccccacatctccaagctacagccccacatctcctagctacagccccacgtctccaagc
tacagccccacgtctccaagctacagccccacgtctccagcctacagccccacgtctcca
gcctacagccccacgtctccagcctacagccccacgtctccagcctacagccccacctct
ccgtcgtacagccccacatctccatcgtacagccccacatctccgtcatacagccccaca
tctccatcttacagtcccacatctccatcatacagccctacttctccgtcgtacagccct
acatctcctgcttacagccctacatctccaggatatagccctacatccccaagttatagt
cctacttcacctagctatagtcctacatctccaagctataacccttcagccaaatacagt
ccatcacttgcatactctccaagcagcccaagaatatcaccatccagtccctacagccct
acctccccaaattacagtccgacatcaccatcttactcgccgacgtcgccctcttactcc
ccttcaagcccaagctatagtccaagcagcccatatggctcaggtccaagccctgattat
agccccagttctcctcagtacagtccaagtgcaggctattctcctagtgctcctggttat
tcaccttcatcaaccagtcagtataccccgcaaatgagcgacaaggatgacaaaagcaag
cgttga
DBGET
integrated database retrieval system
