Chenopodium quinoa (quinoa): 110701601
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Entry
110701601 CDS
T05764
Name
(RefSeq) uncharacterized protein LOC110701601
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110701601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cqi03000
]
110701601
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110701601
04121 Ubiquitin system [BR:
cqi04121
]
110701601
Enzymes [BR:
cqi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110701601
Transcription factors [BR:
cqi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110701601
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110701601
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110701601
Ubiquitin system [BR:
cqi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110701601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
CortBP2
Nab2-like_zf-CCCH_
zf-UDP
RNHCP
FYVE
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
110701601
NCBI-ProteinID:
XP_021734920
LinkDB
All DBs
Position
Unknown
AA seq
1025 aa
AA seq
DB search
MSDEGEKTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDESEGRCPACRTAY
DKDRIVGMAADCERLVQEVNMEKKHKSHKAKVKTSDSRKQLSSVRVIQRNLVYIVGLPLE
LADEDLLQHKDYFAQYGKVLKVSISRTSAGTIQQFANNTCSVYITYSKEEESIRCIQSVH
GFILDARPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEIGSLEDSFTKDEIISAYTRVQE
ITGVTNNMQRRAGTLLPPPADDYCNISSAVIEKPSVKNTLTNSASNSKGSPPNSSSGRSG
ALPPAASWGARVSNCNIPSVSLASSNGSTKQKAETVHEPPVLATIVSNFIPSDIGKKQMS
NEDINANQTKSKMENPEMAKKHAGNSSQRNVSEVSSALLVASAGKSVNQSSCSPAISSDV
EGGEQLLSTNSLDGQPCSSGKDKGNCSVMDGKIQKLCSDLSSLSTDKQLNSEHSEADRPN
GLSLNNFLSPKNQGLQWHESERLQEHSSSTTATTTYSLTAVKEASDVRSDMQASVLHNMS
SETEDDFNNQRLRDAIVINQAVIPTSSPLHLLSHLRAPLQSHGGAECAENYTAASSIVNR
LTDECLTTNVSSSSVASNGFLDCFVSHTPEQDSSLFFRGLQGSHMGRFDGELPFVESQPA
LDMGENNIISNILSLDLDSWDDSLTSPQNLAKLLSETEKPEGTVNIAGSFKGQYSNQSRF
SFARQEDSRNHLLDMEPSLGNIGQAAKNPPFGQEFHGIRDPYFDRMGNGFGFPHWNIDLS
DNLTSGHSIFPTNKLSLSRSQISAPPGFSAPSRPPPPPGFSSHERSDQTYDLMKSGNHVI
DTPSFCRNPYQTPPSGNKSLANDIEFIDPAILAVGKGRLPGGINNSSIDMRSNYPVQPSA
FENDSRLQLLMQRSLSPHQNLRYTDVRDNFSPPNDAYGFSSRYMDQSQVSNHVPFSQFSL
QQPPRNTAVSNGHWDNWSELQSGNDIGIAELLRNERLGNKFYGGYEDAKFRMTNSGDIYN
RSFGM
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgagggtgagaagacctgtcctctttgtgccgaggagatggatttgactgat
cagcaattgaagccttgcagatgtggctatgagatttgtgtgtggtgttggcatcacata
atggatatggctgagaaggatgagtcagagggacggtgccctgcctgtcgcactgcatat
gataaagaccgaattgttgggatggctgcagactgtgaaaggttggtgcaagaagttaat
atggaaaagaaacacaagtcacataaagcaaaggttaaaacatctgatagcaggaagcaa
ttgagcagcgttcgtgttattcaaagaaatcttgtttacatagtggggttacctcttgag
cttgcagatgaagatcttcttcaacataaagactattttgcccagtatggcaaggttttg
aaggtgtctatatcccgtacttcagctggcaccattcagcagtttgcaaacaatacttgt
agtgtatatattacatactctaaagaggaggaatcaattcgttgtattcagtcagtgcat
gggttcattctggacgctaggcctttgagggcatgctttggaaccacaaaatactgtcat
gcatggctaagaaatgtgccctgcaccaacccagattgtttatacttgcatgagattggt
tcactagaggatagcttcacaaaagatgaaatcatatctgcttacacaagagttcaggaa
atcactggggttaccaataatatgcaacggcgtgcagggactttattgcctcccccagca
gatgattattgcaatattagttctgctgtaattgagaagccgtctgtcaaaaatacttta
actaattcagcaagcaattcaaaaggttcacccccaaatagtagttcgggtagatctggt
gccctgccgccagcagcatcatggggagcacgcgtttccaattgcaatattccttctgta
agcttggctagctctaatggatcaaccaagcagaaggctgagacagttcatgagccgcca
gtgcttgcaacaattgtttctaacttcattcccagtgatattggaaagaagcaaatgtca
aatgaagacataaatgcaaatcaaactaaaagtaaaatggaaaatccagaaatggcgaag
aagcatgctggtaatagttctcagagaaatgtttcagaggtctcttctgcacttttagtt
gcttcagctggaaagtcagtaaaccagtcatcttgttccccagcaattagtagtgatgta
gaaggtggtgaacagcttttaagtacaaattctttagatggacaaccttgctcttctggc
aaagacaaggggaattgctctgttatggacggaaaaattcagaaactatgctctgatcta
tcatctttaagcactgacaaacagcttaatagtgaacattctgaggctgacagacctaat
ggtttgagtctgaataatttcttatcccctaagaatcaaggcttacagtggcatgagtct
gagagacttcaggaacattcatcttctactactgctactactacttattctttgactgct
gtaaaagaagcatctgatgtaagatcagatatgcaagcttcggtattacataatatgtct
tcagagacagaagacgacttcaataatcaaagacttcgggatgctatagtcataaatcaa
gcagtgattcccacatcatctccgcttcatcttttgagtcatctaagggctcctttacag
tcgcatggtggtgctgaatgtgcagaaaattatactgctgcctcatctattgtaaataga
ttaactgatgaatgtttgacaacaaatgtatctagttcatctgttgcttctaacggattc
ttggactgttttgtcagccatactccagaacaggatagttctttgttttttagaggtctg
caagggagtcatatgggaagatttgacggtgagcttccttttgtcgagtcacagcctgct
ctggatatgggagagaacaacatcatatcaaatattctttccttagatcttgattcttgg
gatgattctttgacatccccacaaaatttggccaagctattgagtgaaactgaaaaacca
gagggtacggtaaacattgctggttccttcaaaggtcaatatagcaatcaatccagattt
tcttttgcaaggcaggaggactccagaaatcatttattagacatggagccttcgcttggc
aatattggccaggcagcaaagaatcccccttttggacaggaatttcatgggattagagat
ccttattttgatagaatgggcaatggttttggatttcctcattggaatattgacctgtcg
gacaatttaacaagtggccattccatttttcctaccaataaactttctctctctagatct
cagatttcagctccacctggtttctctgcaccaagtaggccaccgccgcctccaggtttt
tcttcgcatgaaagaagtgatcagacttatgacttaatgaagtctggaaaccacgtgata
gacactccttcgttctgcagaaacccttatcagacaccaccaagtggaaataaaagcctt
gctaatgatattgaatttatagaccctgcgattttggctgtcggtaaagggaggctccca
ggtgggatcaataactcctctatagacatgaggtcaaattaccctgtacagccgtctgca
tttgaaaatgattcaagacttcaattacttatgcaaagatctctttcaccccatcagaac
ctcagatatactgacgttagggataatttctctccaccaaatgacgcatatggcttttcc
tctcgatatatggaccagtctcaagttagtaatcatgtccccttttcacaattttcactc
cagcaaccgcctagaaatactgcagtctcaaatggccattgggataattggagtgagctt
caaagtggaaatgatattggtatagcagagctccttaggaatgagagactgggtaacaaa
ttctatggtggttatgaagatgctaagtttcgaatgaccaattcaggagatatatacaac
aggagttttgggatgtga
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