Chenopodium quinoa (quinoa): 110702467
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Entry
110702467 CDS
T05764
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110702467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110702467
03036 Chromosome and associated proteins [BR:
cqi03036
]
110702467
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110702467
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110702467
mRNA degradation factors
5'-3' decay
Decapping complex
110702467
Chromosome and associated proteins [BR:
cqi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110702467
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
110702467
NCBI-ProteinID:
XP_021735867
LinkDB
All DBs
Position
Unknown
AA seq
515 aa
AA seq
DB search
MNHNSRPRFPPGIGNGRGGYVQQNPNFQNRPPYHHQQPQQQPQYVPRNAPPQNQHQYQQQ
QQQQQVQQQQQQQQQQWMMRRPANSATDGGSNQSSVNQVEKSMQTASSGVDSSSQDWKAN
LKLPPADTRYMTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSD
ILARAKNGTGKTAAFCIPALEKIDQDNNVIQAVILVPTRELALQTSQVCKELGKHLKIQV
MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKRGICVLKDCSMLVMDEADKLLSPEF
QPSVEQLIRFLPGNRQVLMFSATFPVTVKDFKDRFLQKPYVINLMDELTLKGITQFYAFV
EERQKLHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRV
FHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRYGHLGLAVN
LITYEDRFNLYKIEQELGTEIKQIPPHIDQGIYCR
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacaactctcgtccgaggtttccgccggggatcggcaacggtcgcggcggttat
gtgcagcaaaaccctaattttcaaaataggccgccatatcaccaccaacaaccgcaacag
caacctcagtatgtgccgcgcaacgcgccgccgcagaatcagcatcagtatcaacagcag
cagcagcagcaacaagtgcaacaacagcaacagcaacagcagcagcagtggatgatgaga
cgtcctgctaattctgctactgatggtggttctaatcagtcttctgttaatcaagttgag
aaatctatgcaaactgcttcttctggtgtggattctagttcccaagattggaaggcaaac
cttaagcttccacctgctgatacccgttacatgacagaggatgtcactgctacaaaagga
aatgaattcgaggattatttcttgaaacgtgagctactcatgggtatatatgaaaaggga
tttgaacgtccttccccaatccaggaggaaagtatcccgattgcgttaacaggaagtgat
attcttgccagagctaaaaatggaactggaaaaacagctgcattttgcatccctgctctg
gaaaaaatagaccaagacaacaatgtaattcaagctgttatactcgttcccactagagag
ttggcccttcaaacatcacaggtatgcaaagagcttggcaagcatctaaagatccaagtt
atggtcacaacaggagggactagtttgaaggatgatattatgcgtttgtatcaaccagtg
catttgctggttggaacaccaggaagaatattagatcttgcaaagaggggcatatgtgtt
ctaaaagactgctccatgcttgtaatggatgaggccgacaaacttttatcccctgaattt
caaccatccgtggagcagttgattcgttttcttcctggaaacaggcaggttttgatgttt
tcggctacttttcccgtcactgtcaaggatttcaaagatagattcttgcaaaagccatat
gtaatcaaccttatggacgagcttactctcaaaggtattacacaattttatgcttttgtg
gaagaaagacagaagctccattgcctgaacacgcttttctcgaagctacaaataaaccaa
tccattatattttgcaattctgtgaatcgagtggaattattggccaagaaaattacagag
cttggttattcttgcttttacatccatgctaagatgctccaggaccatcgaaatagagta
tttcatgattttcgcaatggtgcctgcaggaaccttgtctgcacagatttgtttacaagg
ggtatagacattcaagcagtaaatgttgtaatcaattttgatttcccaaaaaactcagaa
acctatctgcacagagttggtcgttctggaagatatgggcaccttggattggctgtcaac
ctaatcacatatgaggatcgctttaacttgtacaagattgaacaagagcttggcaccgaa
atcaagcaaattcctccgcacatagatcagggtatctactgccggtaa
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