Chenopodium quinoa (quinoa): 110703013
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Entry
110703013 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110703013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110703013
03012 Translation factors [BR:
cqi03012
]
110703013
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110703013
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110703013
Translation factors [BR:
cqi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
110703013
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
T2SSE
ATPase
AAA_16
Dicer_dimer
AAA_30
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
110703013
NCBI-ProteinID:
XP_021736462
LinkDB
All DBs
Position
Unknown
AA seq
1241 aa
AA seq
DB search
MQNLTTVVVNIVFVMKILNALIVSFFVRDPDDFRVFSFTYDHIQKRLVANESYWKALDER
VYGHYNNMNVIEDEEPSVIEFVVEKSLVDESLIEKSLVVETVVENSFVNDEVIHEGKIFK
SILDDKDKDYLHAFVLLGGLQMISDDLVRNGHFEETLVQDLLSGLSWDKWACSQQSSTLD
NIDEWRWKLSMLLRNKDEQEVVSRERKDRRDFDQLSAMATRMGLHSRQYSKVVVFSKVPL
ANYRHDLDDKRPQREVVLSYDLQKDVDILLKRHLSENSLNKEAFQNFSMSRNTSSLGKLG
YNHPEPTVQMIAAKEKMLREKSLRLRIQQREWQESSEGLKMLESRRSLPAYKERDALLKA
ISENQVVVVSGETGCGKTTQLPQYILESEIEAARGASCSLICTQPRRISAMAVSERVAAE
RGEQLGESVGYKIRLEGIKGRDTGLLFCTTGILLRRLLVDRNLRGVTHVIVDEIHERGMN
EDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPMLHIPGFTFPVRAHYLENIL
ETTGYRLTPYNQIDDYGQEKVWKMQKQTMRKRKTQIASAVEDTLEAADYNGYSHRTQDSL
SCWNPDSIGFNLIEHVLSHICKNERPGAVLVFMTGWEDINSLKDQLQAHPLLGDPNRVLL
LACHGSMASAEQRLIFDRPPEGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALN
NTPCLLPTWISKAAARQRRGRAGRVQSGECYHLYPKCVYDAFSDYQLPELLRTPLQSLCL
QIKSLDLGGISEFLSKALQPPEPLSVQNAVDFLKIIGALDENENLTVLGQNLSVLPVEPK
LGKMLILGAMFKCLDPVMTVVAGLSVRDPFMMPFDKKDLAESAKAQFSGRGFSDHIALIR
AYEGWKDAEKQQSGYEYCWRNFLSAQTLKAIDSLRKQFFSLLKDTGLVELDNESQNKWSH
DEHLVRAIICAGLFPGVCSVVNKERSIMLKTMEDGQVLLYSNSVNAQEPKISYPWLVFNE
KIKVNSVFLRDSTAVSDSVLLLFGGDISRGALDGHLKMLGGYLEFFMKPGLADIYLCLKR
ELEELIYYKLLEPKLDICRYVDLLSAIRLLISEDQCEGRFVFGRQLPAPSKKGGKATSVR
GDKKSGDDNSKNQLQTLLARAGHEAPAYKTRQLKNNQFRATVDFNGLEFVGQPCNNKKQA
EKDAAAEAVKWLMGDTPSFGGDIDHLSMFMKKSNKKYGKGT
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgcagaacctgactactgttgttgtcaatatcgtctttgtcatgaaaatcctgaatgcc
cttatagtgagttttttcgtgcgtgatccggatgattttagagtcttttcatttacatat
gatcatattcagaaacgattggttgcaaatgagagttattggaaggctcttgatgaaaga
gtctatggacactataataatatgaatgtgattgaggatgaagaaccatcggttatagaa
tttgtggttgaaaaatcattggttgacgaatcgttgattgaaaaatcattagttgtagaa
acggtggttgaaaattcctttgttaatgatgaggttattcatgagggtaaaatattcaag
tcgatattggatgataaagacaaagactacctccatgcatttgttcttttaggtggcctt
cagatgatttcagatgatttggttaggaatggtcactttgaagagacccttgttcaagat
ctgctctctggcctttcttgggacaagtgggcttgctctcagcaatcttcaacacttgac
aacattgacgagtggagatggaaattgtccatgcttcttcgaaataaagatgaacaagaa
gtggtgtctagagagagaaaggacagacgtgactttgaccaactttctgcaatggcaacc
agaatgggtttgcacagccgtcaatattccaaagtggttgtatttagtaaagttcccttg
gcaaattatcgccatgacctggatgataagcggccacaaagggaggtggtacttagttac
gatctgcaaaaggatgtagatattcttctgaagaggcacctgtctgaaaattcccttaat
aaagaggcttttcaaaatttttccatgtcaagaaatacttccagtctgggtaagctggga
tacaaccatcctgaacccacagtgcagatgattgctgcaaaagagaaaatgcttcgggag
aaaagtttgcgactccggattcagcagcgagagtggcaggaatcatcggagggtctgaag
atgctagaatctcgaagaagtctacctgcatacaaagagagggatgctttattgaaggct
atctcagaaaatcaggtagtagttgtctctggtgaaactggttgtggtaaaacaactcaa
cttcctcaatacattttagagtctgaaattgaagctgctcgtggagctagttgtagcctc
atctgtacacaaccgagaagaatatcagctatggctgtttcagagagggttgctgctgaa
cgaggggaacaacttggagaatcagttggctacaaaattagattggagggcattaaagga
agggatacaggtctcctcttctgtactactggtatactgttgaggagactgcttgttgac
agaaatttaaggggtgtgacccatgtcattgttgatgaaattcatgaacgtggcatgaat
gaagattttctcctgattgtcttgaaagatcttctaccacgccggccagatttgaggctg
attttgatgagcgcaaccctgaatgctgagctattttcctcttactttggtggagctcct
atgctacatattcctggtttcacatttcctgtacgagcacactatctggagaatatcttg
gaaactacaggatataggttgaccccctataatcagattgatgattatggtcaagaaaag
gtatggaaaatgcagaaacaaaccatgaggaagagaaagacacaaattgcatcagcagta
gaggatacactagaagctgctgattataatgggtatagtcatcgtactcaagattcattg
tcctgctggaacccagattcgattggttttaatctcattgagcacgtactatcccatata
tgtaagaatgaaagacctggtgcggtcttagtttttatgactggttgggaggacattaat
tctttgaaggaccagctccaagctcatcctttgcttggagatccgaacagggttttgttg
cttgcttgccatggttccatggctagtgctgaacagaggttgatatttgataggccacca
gaaggagtgaggaaaatagtacttgcgacaaacatggcagagactagtatcaccataaat
gatgtggtcttcgttgtcgactgtggtaaggcaaaagagacatcatatgatgcactaaat
aacactccctgcttgctaccaacctggatctcaaaagctgctgctcggcagagaagaggt
agagctggtcgtgttcaatccggggagtgttaccatctttaccccaaatgtgtctacgat
gctttcagtgattatcaattgccagaacttttgaggacacccctacagtccctctgtctt
cagataaaaagcttagatcttggtggtatttctgagtttctgtcgaaggctttgcaacca
cctgagccattatcggttcaaaatgctgttgattttttgaaaatcattggagctttggac
gaaaacgaaaatcttactgtgcttggtcagaacttgtctgtgcttcctgtggagcccaag
cttgggaagatgctaatattgggggctatgttcaaatgcttggaccccgtaatgactgtt
gttgctggtttaagtgttagagaccccttcatgatgccatttgacaagaaggatctcgct
gagtcagctaaggctcagttctccggtcgtggattcagtgaccatattgcccttattcga
gcttatgaaggatggaaagatgctgaaaaacaacaatctggttatgaatactgttggaga
aattttttgtctgcccagacattgaaagctattgattccctacggaagcagttcttttca
ttacttaaagatacaggtcttgttgagcttgataatgaaagtcaaaataagtggagccat
gacgagcatcttgttcgagcaatcatctgtgctggtcttttccctggtgtttgttccgtt
gttaataaagagagatcaataatgctgaaaacaatggaagatggacaggttcttttgtat
tcgaattcagtgaatgcgcaagagccaaaaatatcatatccatggctagtcttcaatgag
aagataaaggtcaattctgttttcctgagggattcaacagcagtttcagattccgtgttg
ttactgtttggaggagacatttctaggggtgcactggatggacacctaaaaatgctggga
ggatacttagagttctttatgaaacctggcttagcagacatctacctgtgcttgaaaaga
gaacttgaggagctaatttattacaagctcttggagcccaagttggacatatgtagatat
gtggatcttttatctgcaataagattattgatatcagaagatcaatgtgagggtagattt
gtctttggtcgtcaattgccagcaccatcaaaaaagggaggtaaagcgacaagtgttcgt
ggtgataaaaaaagcggggatgataattccaaaaatcaattgcaaactttgcttgcaagg
gcaggacatgaagcacctgcttataagacgagacaactgaaaaacaaccaatttcgcgct
actgtagatttcaatggcttggagtttgttggccaaccttgtaacaataagaagcaagca
gaaaaagatgctgctgcagaggccgtaaagtggttgatgggtgataccccttcattcggg
ggagatattgaccatttgtcaatgttcatgaaaaaaagcaataaaaaatatggcaaagga
acatag
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