Chenopodium quinoa (quinoa): 110704954
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Entry
110704954 CDS
T05764
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 56
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03013
Nucleocytoplasmic transport
cqi03015
mRNA surveillance pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110704954
09122 Translation
03013 Nucleocytoplasmic transport
110704954
03015 mRNA surveillance pathway
110704954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110704954
03041 Spliceosome [BR:
cqi03041
]
110704954
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110704954
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110704954
Spliceosome [BR:
cqi03041
]
Complex C
Other components
EJC/TREX
110704954
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
110704954
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
YihI
Motif
Other DBs
NCBI-GeneID:
110704954
NCBI-ProteinID:
XP_021738458
LinkDB
All DBs
Position
Unknown
AA seq
428 aa
AA seq
DB search
MGETKENDAYEEELLDYDEEEEKVPDPAVTKANGEAAKKGYIGIYSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALV
LCHTRELAYQICHEFERFSTYLPGIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKAIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVS
RAAELNKLLVECNFPSICIHSGMSQEERLARYKGFKDGKQRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSDVLNQVQERFEVDIKELPEQI
DTSTYMPS
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaccaaagaaaatgatgcttatgaagaggagcttcttgattacgacgaggaa
gaagagaaggttccagatcccgctgtcaccaaagctaacggcgaagccgctaaaaagggt
tacattggaatctacagttcaggattcagagacttcttgctgaagccagagctgctgcgc
gcaattgtcgactctggttttgagcatccatccgaagtgcaacacgaatgtattcctcaa
gctattttgggtatggatgtcatctgccaagccaaatctggtatggggaagaccgctgtc
tttgttctctcaaccctgcaacagattgatcctgtggctggacaagttgctgcacttgtt
ctttgtcacactagagaattggcatatcagatatgtcacgagttcgagaggttcagcaca
tatttacctggtattaaggttgctgttttctatggaggtgtcaacataaaaattcacaag
gatctgctcaagaatgaatgccctcacattgtggtgggtactcctggaaggatccttgca
ttggccagagacaaagatctgtcactaaagaatgtcagacactttattcttgatgagtgt
gacaagatgctcgagtcccttgacatgaggagagatgtgcaggagatctttaaaatgaca
ccccatgacaagcaagtgatgatgttttctgcaactctaagcaaggcaatccgacctgtt
tgcaagaaatttatgcaagatccgatggaaatatatgtggatgacgaagccaaattgacc
cttcatggtcttgtacagcactacatcaaattgtccgagttggagaagaatcgcaagctg
aacgacctgttggatgctctggatttcaatcaagttgtcatttttgtcaagagtgtcagt
agggctgctgagttgaacaaacttcttgtggagtgcaactttccttcgatctgcatccat
tctggcatgtcccaggaagaaagattggctcgttacaagggatttaaggatggcaaacaa
agaatacttgttgctacagatttagtcggcagaggaattgacattgaaagagtgaacatt
gttattaattatgacatgccagattcagcagacacatatctgcatcgggttggccgagct
gggaggttcggaactaagggacttgcaattacgtttgtggcatctgcttctgactctgat
gtattgaatcaggtacaagagaggtttgaagtcgatattaaagaacttccagagcagatc
gacacttcgacatacatgccctcataa
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