Chenopodium quinoa (quinoa): 110706025
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Entry
110706025 CDS
T05764
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110706025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cqi03021
]
110706025
03041 Spliceosome [BR:
cqi03041
]
110706025
03036 Chromosome and associated proteins [BR:
cqi03036
]
110706025
Transcription machinery [BR:
cqi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110706025
Spliceosome [BR:
cqi03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110706025
Complex B
110706025
Complex C
U2 SnRNP specific factors
110706025
Chromosome and associated proteins [BR:
cqi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110706025
TFTC complex
110706025
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
110706025
NCBI-ProteinID:
XP_021739628
LinkDB
All DBs
Position
Unknown
AA seq
1209 aa
AA seq
DB search
MYLYSLTLQKPTGIVCAINGNFSGGKVQEIVVARGKVLDLLRPDDSGKIQTLLSVDIFGA
IRSLAQFRLTGSHKDYIVVGSDSGRIVILEYNKEKNVFDKVHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTITYSICGVDCGFDNPI
FAAVEMDYSEADQDSTGQAAAEAQKHLTFYELDLGLNHVSRKWSEPVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNQGHSDVRALIPRRLDLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLEYGNEGVSELKIKYFDTIPVTSSLCVLKSGFLFAASEFGNHALYQFQAI
GDEPDVESSSARMMELETDEGFQPVFFQPRRLKNLLRVDQVQSLMPVMDMKVFNLFEEET
PQIFTLCGQGSRSSLRVLRPGLGITEMATSPLPGVPNAVWTVKKNVNDEFDAYIVVSFAS
VTLVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPSGIRHIREDGRINEWRTPG
KRTIVKVGYNRLQVVIALSGGELIYFEVDMTGQLMEVEKHEMPGDVACLDIAPVPEGRQR
SRFLAVGSYDNTIRILSLDPDDCMQVLSLQSVFSPPESLLFLEIQASTGGEDGADHPASL
FLNAGLQNGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGY
IYQGHFLLTPLTCGTLEFAASFSSDQCAEGVVAVAAEALKVFTIERLGETFNETAIPLRY
TPRKFVLQPKRKLLVTIESDQRALTAEEREAAQKECFGAGLDENGNIEMENGDEDEDNHL
SDEQYGYPKAEKEKWVSCIRVLDPRTEETTCCLELQDNEAAFSICTVNFHDKEYGTLLAV
GTAKSLQFFPKRSFEAAYIHIYRFVDGGKLELLHKTQVEGVPLALSQFQGRLLAGIGSVL
RLYDLGKKKLLRKCENKLFPNTIITIHTYRDRIYVGDIQESFHYCKYRRDENQLYIFADD
VYPRWLTASHHVDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGRLNGAPN
KVEEIVQFHVGDVVSSLQKASLIPGGGECIIYGTVMGSLGAFLPFTSRDDVDFFSHLEMH
LRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPMDMQRKIADELDRTPAEILKK
LEEIRNKII
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
atgtatctctacagtttaacccttcaaaaacccactggcattgtttgcgccattaatggg
aacttctccggtggtaaggttcaagaaattgttgtagcaagaggcaaagttcttgatctt
cttcgccctgatgacagtggtaagattcaaaccctactttctgttgatatttttggtgct
attcgttctttagctcaatttagacttactggttcgcacaaagattatattgttgtcggg
tccgattctggtcgaattgtaatcttagaatacaataaggagaagaatgtgtttgataag
gttcaccaggagacgtttgggaaatcgggttgtcgtcggattgttccgggtcagtacttg
gcgattgacccgaaagggagggctgttatgattggggcttgtgaaaagcagaagcttgtt
tatgttttgaatagggatactgctgctaggttgacgatttcgtctcctttagaggctcat
aagtcgcatacgataacgtattcgatttgtggggttgattgtgggtttgataaccctata
ttcgcggctgttgagatggattattcggaggctgatcaggattctactggccaagctgcg
gccgaggctcaaaaacatcttactttttatgagcttgatttgggtcttaaccatgtttct
aggaagtggtcagaacctgttgataatggtgctaatatgcttgttacagtgcctggtggt
ggggatgggcctagtggtgttttagtttgtgctgagaattttgtgatttataaaaatcaa
gggcattctgatgttcgggctttgattcctaggagattggatttgcctgctgaacgtggg
gtgttgattgtgtctgctgcaactcacaagcagaaatcaatgttcttctttttgcttcag
acggagtatggtgatatatttaaggtcactttggagtatggcaatgagggtgtatccgaa
ttgaagataaagtattttgatacaatccctgtaacgtcttcattgtgtgtgttaaagtct
ggtttcttatttgctgcatccgaatttggtaatcatgctctttatcagtttcaagctatt
ggagatgaacctgatgtagagtcttcttctgctaggatgatggaattggaaaccgatgaa
ggttttcagccggtgttcttccaacctaggaggcttaagaaccttcttagggttgaccag
gttcagagtttgatgccggtaatggacatgaaagtgtttaatctttttgaggaagagact
ccccagatttttacgctgtgtggacaaggttctcgttcctctttaagggttttaaggcct
ggtttgggaattactgagatggctacctctccacttcctggtgtgccaaatgcggtatgg
acagtgaaaaagaatgttaatgatgaatttgatgcttatattgtggtttcatttgctagt
gtaactcttgtactctcaattggtgagacagttgaagaagttagtgacagtggattctta
gatactactccttctcttgctgtatctttgattggtgatgattctctcatgcaagtccac
cctagtggtattaggcacattagggaagatggtcgtatcaatgagtggagaacccctgga
aagaggaccatagttaaggttgggtacaacaggcttcaagttgttattgcactcagtgga
ggagagcttatctactttgaggtggatatgactggtcagttgatggaagtagagaaacat
gaaatgcctggagatgtggcttgtttggacattgctccagttccggaagggagacagaga
tctcggtttcttgcagttggttcctatgataatactattcgtatcttatctcttgatcca
gatgattgtatgcaagtgttgagtctgcaaagtgttttttcgccccctgaatctttactg
tttcttgagattcaggcatcaaccggaggtgaggatggtgctgatcatcctgccagcctt
ttccttaatgctggtttgcagaatggtgtattgtttaggacagttgtagacatggttaca
ggtcaactctctgattctcgttctcggtttttggggctcagagccccaaaacttttttca
attatagtgcgaggtcggcgtgcgatgctttgtttgtcaagccgtccttggcttgggtac
atatatcagggacacttccttttgacacctctgacatgtggtacacttgaatttgcggcc
tcattttcatctgatcagtgtgcagaaggtgtagttgccgttgctgctgaggctttaaag
gtgtttactattgagaggcttggtgagacatttaatgaaactgcgatccctttgaggtac
actccacgaaagtttgtgctccagcctaagcggaagttgctggtcacgattgagagcgat
cagcgtgcattaactgctgaagaacgcgaggctgcacagaaagaatgctttggtgctggg
ttggatgagaatggtaatattgaaatggaaaatggtgatgaagatgaagataatcatctc
tctgatgagcagtatggttatccaaaagcagagaaagagaaatgggtttcttgcatcagg
gttcttgatccaagaacagaggaaactacttgctgcctagagcttcaggataatgaggct
gcatttagtatatgcactgtaaatttccatgacaaggagtatgggaccctactagctgtt
ggtactgcgaagtcattacaatttttccctaaaagatcgtttgaggctgcatatattcat
atttatcgatttgttgatggtggaaaacttgaacttttgcacaaaacccaagtagaaggt
gttccattggctttatcccaatttcagggaagattacttgcaggaataggatctgtgctc
aggctgtatgatttgggcaagaagaaattacttagaaaatgtgagaataagctgtttcca
aacacaattattactatacacacttatcgtgatcgtatttatgtgggtgatatccaagag
tcattccattattgcaagtatagacgggatgagaaccagctctacatatttgctgatgat
gtttaccctagatggctcactgcgtcacaccatgttgattttgacacaatggctggtgca
gacaagtttgggaatgtatattttgttcggctacctcaggatgtctctgacgaaattgaa
gaggaccctactggtgggaaaataaaatgggaacagggtagattaaatggagctcctaac
aaggtggaggagatagttcagtttcacgttggtgatgttgtatctagtctgcagaaggca
tctcttatacctggtggtggagaatgcattatttatggcactgtaatggggagcttggga
gcatttcttcctttcacatcccgtgatgatgttgacttcttttctcacttggaaatgcat
ttgaggcaggagcacccacctctgtgtggcagagatcatatggcatatagatctgcatat
tttcctgttaaggatgtgattgatggagatctgtgtgaacagtttccaactttacctatg
gatatgcagaggaagattgcagatgaattggacagaactcctgcagagattctaaagaaa
ctggaagagattcgaaataagattatttga
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integrated database retrieval system
