Chenopodium quinoa (quinoa): 110706925
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Entry
110706925 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110706925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110706925
03041 Spliceosome [BR:
cqi03041
]
110706925
03009 Ribosome biogenesis [BR:
cqi03009
]
110706925
03016 Transfer RNA biogenesis [BR:
cqi03016
]
110706925
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110706925
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110706925
Spliceosome [BR:
cqi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110706925
Complex C
U4/U6.U5 tri-SnRNP related factors
110706925
Ribosome biogenesis [BR:
cqi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110706925
Transfer RNA biogenesis [BR:
cqi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110706925
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
ATPase_2
nSTAND3
Terminase_6N
DUF4391
Motif
Other DBs
NCBI-GeneID:
110706925
NCBI-ProteinID:
XP_021740616
LinkDB
All DBs
Position
Unknown
AA seq
988 aa
AA seq
DB search
MGSAKRKSIEEENSTMESKPPPLKMMREDNNTIACFHDVSYPQGYAPPYPTNSSTSTPAK
EFPFSLDPFQSEAIKCLENCESVMVSAHTSAGKTVVASYAIAMSLRNKQRVIYTSPIKAL
SNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEIAREVAWAIFDEV
HYMRDKERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPT
PLQHYIFPSGGKGLYLVVDEKAKFREDSFQKALNALAPAAEGEKKRENGKWQKGVVIGKL
GEESDIFKLVKMLIQRQYDPVIFFSFSKRECEFLAMQMAKMDLNGDDEKMNIETIFWSAM
DMLSDDDKKLPQVTNLLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIG
LNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDDRGICILMVDEKLEPSTA
KMMLKGNADSLNSAFHLSYNMLLNQLRCEDGNPENLLRDSFYQFQADRAMPDLERQAKQL
KEERDSIIIDGEESLKNYYSLIEQYKSIKKDVRDIVFSPKYCLPFLQPGRLVCIECTRTD
EDLPSFSIEDIVTWGVIINFRRIKSVSEDEGSKKPEDASYTVDVLAKCMVSGEDGAKKTT
KIVPLKDSGEPIVVSVPLSQIYNVSSIRVIMSKNLLPLEARENTLKKVSEVLSRFSKDGV
PLLDPEEDMKVQSSLYRKAVRRIEALESLFGKHEVAKSPLIKEKLKTLHQKQELAAKIKS
IKRQMKTSTALAFKDELKARKRVLRRLGYVTNDDVVELKGKVASEISSADELTLTELMFS
GIFKDIKLEDMVALLSCFVWQEKLQDAQKPREELELLFAQLQDTARRVAKVQLECKVQID
VENFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAAKSI
GEIELESKFEDTVSMIKRDIVFAASLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atgggctctgctaagaggaaatcaatagaagaagaaaactcaacaatggagtctaaacca
ccaccccttaaaatgatgagagaagataacaacactattgcttgcttccatgacgtttca
taccctcaaggctatgcccctccttatcctactaactcttcaacctctacccctgccaag
gaattccccttctcccttgacccttttcagtctgaagccatcaagtgccttgagaattgc
gagtctgttatggtgtcagctcatacctcagctggaaaaacagtggtggcttcgtatgca
attgctatgtcgttgcggaacaagcaaagggtgatatatacttcccctatcaaggctctt
agcaaccagaaataccgagaattcaaagaagaattttcagatgttggtttgatgacagga
gatgtcacaattgatcctaatgcttcttgcttggtgatgacaacagaaatctggcgaagt
atgcagtatagaggatctgaaattgcaagagaggttgcatgggcaatatttgatgaggtt
cactatatgcgtgataaggaacgaggtgtggtatgggaagagagcatagtgatggctcca
aagaactctcggtttgtattcctatcagcaactgtacctaacgctaaggagtttgcagat
tgggttgctaaggttcaccagcagccatgtcatattgtatatacagattatcggccaaca
ccgctacaacattatatatttccttcaggtggaaaaggcctgtacttggtggtggatgag
aaggctaaatttcgtgaagatagtttccagaaagccttgaatgcccttgcccctgctgct
gaaggtgaaaagaagagagagaatgggaagtggcaaaaaggtgtggtcattggtaagttg
ggagaagaaagtgatatcttcaagctggtgaaaatgcttatacagcgtcagtatgatcct
gttatattttttagcttcagcaaaagagagtgtgaatttctagccatgcagatggcaaag
atggatttgaatggggatgatgaaaagatgaacatagaaactattttctggagtgctatg
gacatgttgtctgatgatgacaagaagctccctcaggttacaaacctgttacctctctta
aaacgtgggataggagttcatcattctggcttgcttccaattctgaaggaagtaattgaa
attctatttcaagaagggcttatcaagtgcttatttgcaacagagacctttagcattggt
ttgaacatgcctgcaaagaccgttgtgtttacaaatgtccgtaagtttgacggagataag
tttcgatggatttctagtggagagtatatacaaatgagtggtcgtgctggtcgtcgaggt
attgatgaccgtggaatatgtattctgatggtggatgagaagcttgaaccttcaactgcc
aagatgatgcttaaagggaatgctgatagtttgaacagtgcctttcatctgagctacaac
atgcttttgaatcaattgcggtgtgaagatggtaaccctgaaaatttgctccgtgactca
ttctatcagtttcaagctgatcgtgccatgcctgatttggagaggcaagctaaacaactt
aaagaggagagggattcaattattattgatggggaagaaagcttgaagaattattactct
ttaatcgagcaatacaaaagtataaagaaagatgtccgtgatattgttttttctcccaag
tattgcttacctttcttacagcctggaagacttgtatgcattgaatgcacaagaactgat
gaagatcttccatcattctccattgaggacattgtgacttggggtgtcattataaatttt
cgaaggattaagagtgtttctgaagatgaaggcagtaaaaagccagaggatgcaagctac
actgtagatgttcttgcaaaatgcatggtgagcggagaggatggagcaaagaaaactact
aaaattgttccacttaaggattcaggggagcctattgtagtgtctgttccactttctcag
atttacaatgtgagtagcatacgtgtgattatgtccaagaatcttttgccattagaggct
cgagaaaacacgttgaagaaggtatcagaagttctgtccaggttttctaaggatggagtt
cctttgctagatcctgaagaagatatgaaggttcaaagcagcttatacagaaaggctgtt
cgcagaattgaagcattagagagtctgtttggaaagcatgaagtggcaaaatctcctttg
attaaggagaaacttaaaacgttgcatcagaagcaagaacttgctgccaagataaagtct
attaaaagacaaatgaagacctctactgcattagcattcaaagatgagctcaaagcaagg
aaacgagttttgaggcggcttgggtatgttaccaatgacgatgttgtggagttgaagggg
aaggtagcctctgaaattagtagtgctgatgagttgacgctaacagagcttatgttcagt
ggcatttttaaagacataaagttagaagatatggtggcccttttatcatgttttgtatgg
caagaaaaacttcaagatgctcaaaaacctagagaagaacttgagctgctctttgcacag
ttacaagatacagctaggagggttgccaaagtccagcttgagtgcaaggtccaaattgat
gttgagaattttgtgagctcattccggcctgatattatggaggcagtctatgcctgggct
aaaggatccaaattctatgagatcatggaaattacgcaggtttttgagggaagtttgatc
agggctattaggagattggaagaagtccttcagcaactcattctcgcagctaaatctatt
ggggagatagagcttgaatctaagtttgaagacactgtctccatgattaaaagggacatt
gtctttgctgcatcattatacttatag
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