Chenopodium quinoa (quinoa): 110707071
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Entry
110707071 CDS
T05764
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110707071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110707071
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110707071
mRNA degradation factors
5'-3' decay
Decapping complex
110707071
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EML_2
Beta-prop_RIG_2nd
SUS_EPBD
Baculo_PEP_C
Motif
Other DBs
NCBI-GeneID:
110707071
NCBI-ProteinID:
XP_021740796
LinkDB
All DBs
Position
Unknown
AA seq
1366 aa
AA seq
DB search
MASTGNPNQLQTAAAAQQQAQGGSGGGGGQFDMNKFFKPSNLASAPPPPQAAQNPNNYGP
SASYPPPTAGPYSFPPQNPTPPYYHHYPPQDQMHHQRSVSFPTPPLQPVPSAPPQNPSPG
ARLMALLSSPPPDFNYSHQNPAPVPAPMPSSSMPPSVPVSPTVVQPAPIRMPSSKLPRGR
HLLGDHMLYDIDVRSQGEDQPQLEVTPITKYVSDPGLILGHQIAVNKTYICYGLKLGNIR
VLNINTALRALLRGHTQRVTDMAFFAEDVHLLASASIEGRIYVWKISEGPGKEDKPEISG
NIVLAIHITGNEGSVHPRVCWHCHKQEILVVAIGKTVLKIDTTKVRKGVEFSGEEALACP
LDKLIEGVQLVGKHEGEVTDLSMCQWMTTRLVSASKDGTIKIWEDRKAAPLLVLRPHDGH
PVDAAKFLAAPHRPDHIMLITAGPLNREVKLWASSDEEGWLLPSDAESWRCIQTLELTSS
AEPEAEEAFFNQVVALSQGGLLLLANAKKNAIYAIHLEYGATPAATRMDYLSGFTVTMPI
LSFTATSDVLPHGEHLVQVYCVQTQAIQQYALDRSQCLPPPLENLSLEKSESTVSRDAAE
YVPGLEPSGSKSFEVPYSAAKSSNHISGLGSSPEIKCPANDASDATSVQDITTANVDSNS
TLLLPTSSNADVVSVAPPPLPPSPRLSKKFSDLRGDQAATDYPVDRQMDSAQTSSSALPA
SNEDSRTVQGNTSDAVPTMFKHPTHLVTPFEIMATSSADATRVSENGENEAKIQDDVVSK
DAGNVEVEVKVVDETGFGNSDESSRQVDPQSYQTERKKSFFSQASDLGADMSRECCALPS
ETSIMEEARNSIMEALAQPSNSGEEEGDEANNDVSRKAADYAATTPVPQSPTPGAKGKKQ
KGKNSQASGSLSPSLSVSNAADLFQAGSGVQFVEPSSSSQMLAMHETLNQILNAQKEMQK
QMSTVVSTPITKEGRRLEAALGRSIEKASKANTDALWARTQEEITKLEKSLRDRMQQIHG
LVNNMVNKDFLAVLERTLKKELAAVGTNVARTISPVIEKTISSAITDSFQRGVGDKAVNQ
LEKSVTSKLEATVARQIQAQFQTSGKQALQDGLRSCLEASIIPAFEMSCKAMFEQVDSAF
QKGMSEHTAAAQHQIELTNSQLALTLRDALTSASSLTQTLSGELADNQRKLFALAAAGAN
SKAGNTLATQLSNGPLSGLHEKVEQPFDPTKELSRLISEHKYEEAFTAALQRSDVTIVSW
LCSQVDLQRLLSTMPLPLSQGVLLSLLQQLSCDITKDTARKLAWMTDAAACIHPHDPMIA
VHVRPILEQVYQILNHQRSLPTTSSSELSSIRVVMHVINAMLLTCK
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaactgggaatccaaatcaactgcagacggcggcggcggcgcagcaacaagca
caaggcggcagcggtggtggaggaggccaattcgatatgaataagttcttcaaaccctcg
aatttagcatcagcaccaccaccaccacaggcggcgcaaaaccctaacaattacgggcca
tccgcttcgtaccctcctccgactgccggtccatactctttcccacctcaaaaccctact
cctccttattatcatcactatcctcctcaagatcaaatgcatcaccaaaggtctgtttct
ttccctactcctcctcttcagcctgttcccagtgctcctcctcaaaaccccagccccggc
gcccgtctcatggccttgcttagcagtcctcctcccgatttcaattactctcatcaaaac
cctgctcctgtacctgcccctatgccgtcctcctccatgcctccttctgttcccgtctct
cctactgttgttcagcccgcccctattcgtatgcctagcagcaagcttcccaggggacgc
catttgcttggcgatcatatgctttatgatatcgatgttaggtcccagggcgaggaccag
cctcagttggaggtcactcccattaccaagtatgtctctgatcctggcctcatccttggt
catcaaattgccgtcaacaaaacttatatatgctatggccttaagctcggaaatattcgt
gttctcaacattaataccgccttgagggctcttcttcgaggtcacactcagagggtaaca
gatatggccttctttgcggaagacgttcatcttctggctagtgcaagcatagagggacgc
atttatgtatggaaaatttctgaaggcccaggtaaggaagataagccggaaatttctgga
aatattgtgctagctattcatataactgggaatgaaggatctgttcatccacgagtttgc
tggcactgtcacaaacaagaaattttggttgtggccattggaaaaactgtccttaaaatt
gatactacaaaggttcgcaagggtgttgaattttctggagaggaggctcttgcatgtcct
ttggacaagctgattgaaggggttcagctagttggtaaacatgaaggggaggttaccgat
ttatcaatgtgccaatggatgacgactcgtttggtttcagcttccaaggatggaacaatt
aagatttgggaagatcgcaaggcagcgccacttctggtattgaggccccatgatggtcat
cctgttgatgcagccaagtttttggctgccccacaccgaccagaccatatcatgctgata
acagctggaccacttaatcgagaggtgaagctttgggcttcttctgacgaagaaggatgg
ttgctgcctagtgatgctgaatcttggaggtgcatacagacactagagctgacaagctct
gctgaacctgaagctgaggaagcttttttcaatcaggttgtggccttgtctcaaggggga
cttcttttactagcaaatgccaaaaagaatgctatatatgcgattcatttagaatatggt
gccactccagcagcaacccggatggattatttatcagggtttacagtcactatgcctatc
ctaagctttactgctacaagtgatgttttgcctcacggggaacacctagttcaagtttat
tgtgtccagacacaagccatacagcagtatgctttggaccgctcacaatgcttgccacca
ccattggaaaacttgagtttagaaaaatcggagtccactgtttctcgtgatgcagctgaa
tacgttcctggcttagagccatctggaagcaaatcttttgaggttccctattctgcagcc
aaatcaagtaaccatattagtggtctagggagctcacctgagattaagtgtcctgcgaat
gatgcttctgatgcaacatccgtgcaggatatcactactgcaaatgtggattccaactct
actttgttattaccaacatcgagcaatgctgatgttgtgtctgttgcaccacctcctctt
cctcctagtccaaggttatctaaaaaattcagtgatttgcgcggtgatcaagctgctact
gattatcctgttgataggcaaatggatagtgcacagactagttcatcggctttgcctgcc
tcaaatgaagatagccgaactgtacaagggaatacttctgatgctgttcctaccatgttt
aaacacccaactcatcttgttactccttttgagattatggctacatcttcagctgatgca
acccgtgtgtctgaaaatggtgaaaatgaggctaaaattcaagatgatgttgtgagtaaa
gatgcaggaaatgttgaggttgaggttaaagttgtagacgaaactggatttggtaacagt
gatgagtcttctcggcaagtagatcctcaatcataccagacagaaaggaaaaaatctttc
ttttcacaggcatcagatctgggggctgatatgagtcgggagtgttgtgcattaccctct
gagacatctataatggaagaagctagaaatagcataatggaggctctagcacaaccttca
aactcaggtgaggaggaaggagatgaagccaataatgatgtgtctaggaaagctgcagac
tatgctgctacaacaccggtgccacagtctcctacaccaggtgccaaagggaaaaaacag
aagggaaagaactctcaagcatctggttcattatctccttcacttagtgtttcaaatgca
gcagatttgtttcaagcgggttcgggtgtgcaatttgtggagccctcttctagttcacag
atgctggctatgcacgaaacacttaatcagatattaaatgcgcagaaagaaatgcagaag
cagatgagtacagttgtttctacaccaattactaaagaaggtagaaggctagaggcggct
ttaggacggagcatagagaaggcttcaaaggccaatactgatgctttgtgggctcgcaca
caggaggagattactaaacttgagaagtcgttacgagatcgtatgcagcagatacatggt
ttggtaaataacatggtgaacaaggactttcttgctgtgcttgagagaacattgaagaaa
gaattggctgctgttggcacaaatgtagctcgtacaataagtccagttattgagaaaaca
atttcttcagctatcacagattccttccagagaggggttggtgacaaggcagtgaatcaa
ttggagaaatctgtaacctcaaaacttgaagctactgttgccaggcagatccaagctcag
ttccaaacttctggcaaacaagcacttcaggatggattgaggtcttgtttggaggcttct
atcatccctgcttttgagatgtcctgcaaagcaatgtttgagcaagttgattctgcattc
cagaagggaatgtctgaacatacagcagcagcacaacatcaaattgaattaacaaactct
cagctagcccttacccttagggatgctctaacttcagcttcatcactgactcaaaccttg
agcggagaattggctgataatcagaggaagttgtttgctcttgcagctgctggtgcaaac
tccaaagcaggaaatacgctggccactcaattgagcaatggacctttgtcgggtctacat
gagaaggttgagcagccatttgatccaacaaaagagctatctagactcatctctgaacac
aagtatgaggaggcatttactgcagctttgcaaagaagtgatgtgaccatcgtctcctgg
ttatgctcacaggttgatctacagcgtcttttgtcaacgatgccattgcctttgagtcaa
ggtgtcttactctcacttctgcagcagctttcttgtgatataacaaaggatacagcaagg
aagttagcgtggatgacagatgccgctgcatgcatacacccgcatgacccaatgattgca
gtgcatgtgcgtccgattttggagcaggtttaccagatattgaaccatcaacgtagcctt
cctacaacctcatcctcagagttgtcgagcatccgggttgtgatgcacgtcatcaacgcc
atgttgctgacctgtaaatga
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