Chenopodium quinoa (quinoa): 110708133
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Entry
110708133 CDS
T05764
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110708133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110708133
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110708133
Spliceosome [BR:
cqi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110708133
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
WHD_HA2
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
110708133
NCBI-ProteinID:
XP_021741932
LinkDB
All DBs
Position
Unknown
AA seq
556 aa
AA seq
DB search
MSVAARVSKEMGVKLGHELGYSIRFEDCTSEKTSIKYMTDGMLLREFLGEPDLCSYSVIM
LDEAHERTVTTDILFGLVKDVARFRPDLKLLISSATLDAEKFSDYFDSAPLFKIPGRPYE
NHLVILMFLTGQEEIETVEEILKHRTRGLRTKIAELIICPIYANLPTHLQNKIFEPTPEG
ARKVVLATNIAETSLTIQGIKYVIDPGFVKIKSYNPRTGVESLLVKPISTASANQRAGRS
GRTGPGKCYKLYTAYNYQELEDNTVPEIQRTNLANVVLTLKCLGIQDLLSFDFMDPPPSE
SLLKALELLCALGALNKQGELTKVGRRMAEFPLDPMLSKMIVASEKYRCSEEIIRIAAML
SIGNSIFYRPKDKQVLADNARLRFSEGDVGDHIALLNVYNEWKSYDYGSMWCYENFVQLK
SMKRARNIRDQLKGILERVEIEVTSNLNDLEAIKKAITAGFFPHSAKLQKDGSYRTIKHP
QIAYLHPSSSLAQIHPQPRWVVFHELVLTTKEYMRQVTELKPEWLIEIAPHFYKKKDVED
SDTKKMPQGKGLSAFS
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgctgctcgtgtttccaaagaaatgggtgtgaaactcgggcatgagttaggc
tattccattcgttttgaagattgtacatctgagaagacgagtattaagtatatgacagac
ggtatgttgctccgtgaattccttggtgaaccagacctttgtagttacagtgttatcatg
ttggatgaagcacatgagaggactgttactacagacatattatttggtttggtcaaggat
gttgctcgctttcgacctgacttgaagttactcatctcaagtgcaactcttgatgctgag
aagttcagtgattattttgattcagccccactattcaagattccggggaggccttatgag
aaccacctggtgatattgatgtttctcacaggacaagaagaaattgaaacagtagaggag
atattgaagcacaggactaggggcctcagaacgaagattgctgaactcatcatatgcccc
atttatgccaacctaccgacacatctgcagaacaagatatttgaacctactcccgaagga
gcacgcaaggttgtgttggccacaaacattgcagagacatctctaacgatccaggggatc
aaatatgttatagacccgggatttgtcaagataaaatcatataatccaagaacaggggtg
gagtcattgttggttaagccaatctccacggcatcagcaaaccaacgtgcaggtcggtct
ggacgaacaggtccaggtaagtgttacaaattatatacagcttataattaccaggaattg
gaagataatactgtcccagaaattcaacgaactaatcttgcaaatgttgtgcttactctc
aaatgtcttggaattcaggacttgttgagctttgatttcatggatccaccaccatctgaa
tcattattgaaagctcttgagttgctttgtgcactaggtgctctgaataagcaaggtgaa
ttgacaaaagttggaagaagaatggcggaatttccccttgatcccatgttatcaaagatg
attgttgcttctgagaagtatagatgctcagaggagattattagaattgcagcaatgctt
tctataggcaactcgatcttttaccgccccaaggataaacaagtccttgcagataatgca
agattgagattcagtgagggggatgttggagaccatattgctcttctcaatgtttacaac
gaatggaaatcatatgactatggaagcatgtggtgttacgagaattttgttcagctcaag
agtatgaaacgagcaaggaatataagagatcaactcaaagggatcttagagagggttgaa
atagaagtcacatctaatctgaatgatttggaagcaatcaaaaaagctatcacagctggt
ttcttccctcactcagcaaagttacagaaagacgggtcctataggacaattaagcatcct
cagattgcataccttcatcctagttcaagcttagcacagatacatccacagccaaggtgg
gttgtattccatgagctggttttgacaaccaaagaatatatgagacaagtaaccgagctg
aaaccagagtggctgattgagatagctcctcacttctataaaaagaaggatgtcgaagac
tctgacacaaagaaaatgccacagggtaaggggctatctgcttttagctga
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