Chenopodium quinoa (quinoa): 110710326
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Entry
110710326 CDS
T05764
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110710326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cqi03019
]
110710326
03041 Spliceosome [BR:
cqi03041
]
110710326
03009 Ribosome biogenesis [BR:
cqi03009
]
110710326
03016 Transfer RNA biogenesis [BR:
cqi03016
]
110710326
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110710326
Messenger RNA biogenesis [BR:
cqi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110710326
Spliceosome [BR:
cqi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110710326
Complex C
U4/U6.U5 tri-SnRNP related factors
110710326
Ribosome biogenesis [BR:
cqi03009
]
Eukaryotic type
Pre-60S particles
Helicases
110710326
Transfer RNA biogenesis [BR:
cqi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110710326
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
110710326
NCBI-ProteinID:
XP_021744301
LinkDB
All DBs
Position
Unknown
AA seq
1034 aa
AA seq
DB search
MAEPPQSTVAEPPSSTTLENPNDSLTEQQTLGKRKHSESKEPLPQQNSPEKQQLQQQNQQ
QNQTQSQENSELPSSKRRNSTRTCVHEVAVPKDFISDKDSTIYGTLANPSFDGPMAKKYA
FTLDPFQQVSIACLERKESVLVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQ
KYRELSQEFTDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEVLKEVAWVIFDEIHYM
KDRERGVVWEESIVFLPTEIKMVFLSATMSNATEFAEWICNIHKQPCHVVYTDFRPTPLQ
HYVFPVGGSGLYLVVDENEQFREDNFLKLQDTFVKPGNGMKNAAAKASGRIAKAGSGPKG
GSDIYKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTEEEKDIVEQVFKNAILC
LNEEDRSLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLFQEGLVKALFATETFAMGLN
MPAKTVVFTAVKKFDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICIIMIDEQMEMNSLRD
MVLGKPAPLVSTFRLSYYSILNLMCRAEGQFTAEHVIRNSFHQFQHEKTLPEIEKKIEKL
EQEAAMLDASGESEVAEYHKLRLNLAQLETKMISEITRPERILYYLVPGRLVRIREGVTD
WGWGVVVNVVKKPPAAVGTVPRGGGYIVDTLLHCSPGTSENGSRPKPCPPRPGQKGEMHV
VPVQLSFIAALSKLRISVPPDLRPVDARQSLLLGVQELEKRFSQGLPKLNPVKDMGIDDK
EIVELVSQIEELEQKLFSHPMHKSQDDHQVKCFQRKAEVNYEIQLLKSKMRESQLQKFRD
ELKNRSRVLKKLGHIDADGVVQLKGRAAALIDTGDELLVTELMFNGTFNDLDHHQVAALA
SCFVPCDKSNEQIHLRAELAKPLQQLQDSARRIAEIQHECSLDVNVEEYVESTCRPYLMD
VIYCWSKGSNFFEVIQMTDIFEGSIIRLARRLDEFLNQLKAAATAVGETDLENKFADAST
SLRRGIMFANSLYL
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaccacctcaatcaacagtggcggaacctccatcatcaacaacactggaaaat
ccaaacgattcacttacagaacaacaaaccctaggaaagcgaaaacattccgaatccaaa
gaaccattacctcagcaaaactcaccagaaaaacaacaactacaacaacaaaatcagcag
caaaatcagacacaatctcaggaaaactcagaattaccaagctcaaagcgacgaaattcg
actcgaacttgcgtacacgaagtagcagtgccgaaagatttcatctcagacaaagattca
accatttatggaactctggcaaaccctagcttcgatggtccaatggcgaaaaagtatgct
tttactcttgatccatttcagcaagtttcgattgcttgtttagagcgtaaagaatcagtc
cttgtttccgcccacacttccgccggcaaaaccgccgttgccgagtatgccattgccatg
gcatttcgcgataagcagcgagtaatctacacttcgcctctgaaagcactgagcaatcag
aagtacagggaattgagccaggagttcactgatgttggtcttatgactggtgacgttact
atctctcctaatgctagttgtttagtgatgacaacggagattcttcgcggtatgttgtac
cggggttccgaggtgttgaaagaggttgcttgggttatatttgatgagattcattatatg
aaggatagagaaagaggggttgtttgggaggagagtattgtgttcttgcctaccgagatt
aagatggtgtttttatcggctactatgtcgaatgcaaccgagtttgctgagtggatttgt
aatattcataagcagccttgtcatgttgtttatacggatttccggcctacaccgttgcag
cattatgtgtttccggttggagggtcggggttgtacttggtggtggatgagaatgagcag
tttagagaggataactttttgaagcttcaggatacgtttgtgaagcctggtaatgggatg
aagaatgctgctgccaaggctagtgggaggattgcaaaagctggatcgggacctaaaggg
ggttcggatatatacaagattgtcaagatgataatggagcgcaaatttcagcctgtcatt
gtatttagtttcagtagaagggagtgtgaacaacatgcaatgtccatgtcaaagcttgat
tttaatacggaagaagagaaagatattgtggagcaggtctttaaaaatgcaattctctgc
ttgaatgaggaggacaggagccttcctgctattgagttgatgttgccacttcttcaacga
ggcattgccgtgcatcattctgggcttcttccaattattaaggaattggtggagctactt
ttccaagaagggcttgtgaaggcgctatttgccactgagacatttgcaatgggcttaaat
atgcctgcaaaaacagttgtttttactgcagtgaaaaaatttgacggtgatagtcatcgt
tatattggatctggtgagtatattcagatgagtggaagagctggtcgccgtggcaaggat
gatcgaggcatttgcattataatgattgatgagcagatggaaatgaattctttaagagat
atggtgttgggtaagccagctcctcttgtcagcacttttagattgagttactactcaatc
ttgaatctaatgtgccgagctgaaggccaattcactgctgaacatgtcattagaaattca
tttcaccaattccagcacgagaagactttgcctgaaatcgaaaaaaagatagagaaactt
gagcaggaagctgccatgcttgatgcttctggagagtctgaagttgcagaataccataag
ctaagacttaatttagctcaacttgagacgaagatgatatcagagattacaaggcctgag
agaattctttactatctagttcctggaagactggttaggatacgtgaaggagtaactgac
tggggttggggagttgtggtcaatgtggtgaaaaagcctcctgctgctgtgggaactgtt
ccacgtggtggaggctatatagttgatacgctgcttcattgctcccctggtacaagtgag
aatggttcaaggcctaaaccatgtccccctcgacctgggcagaagggtgaaatgcatgtg
gttccagtgcaattgtcctttatagctgccctcagtaagctccggatttctgtccctcct
gaccttcggcctgttgatgccagacaaagcttacttcttggagtacaggagctggaaaaa
cgtttttctcaaggcctcccaaagcttaatcccgtaaaggatatgggtattgatgataag
gaaatcgtcgagttggtcagccaaattgaggaacttgagcagaaattgttttcgcatccg
atgcacaagtctcaagatgatcatcaagtcaaatgtttccaaagaaaagctgaggtgaat
tatgaaattcaactgttgaagtcgaagatgcgtgagtctcagcttcaaaagttccgtgat
gagctgaaaaataggtcacgtgtcttgaagaagttgggtcatattgatgctgatggtgtt
gtccagttaaagggacgggctgctgcattgatagacaccggagacgaacttcttgttact
gagctgatgttcaatggtacgtttaatgatctggatcatcatcaagttgccgctcttgca
agttgctttgtcccgtgtgataaatcaaacgaacagattcatttgcgagcagaacttgca
aaacccttacagcaactccaagacagtgctagaagaatagcagagatacaacatgaatgc
agcctggatgtaaacgtggaagaatatgttgagtcaacttgcagaccgtacttgatggat
gtaatatactgttggtcaaagggatccaatttttttgaggttatacaaatgactgatata
tttgagggaagtatcataagactggcgagaagactggatgagttcttaaatcagttgaaa
gctgctgctactgcagtgggagagactgacctggaaaacaagtttgcagacgccagtacc
agcctccgtcgaggtattatgtttgctaactctctttacttgtag
DBGET
integrated database retrieval system
