Chenopodium quinoa (quinoa): 110710613
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Entry
110710613 CDS
T05764
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110710613
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110710613
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110710613
Spliceosome [BR:
cqi03041
]
Complex C
Other components
Step II factors
110710613
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
AAA_22
DEAD
HA2_C
AAA_19
AAA_30
ABC_tran
AAA_29
Helicase_RecD
nSTAND3
SLFN-g3_helicase
Flavi_DEAD
SMC_N
Motif
Other DBs
NCBI-GeneID:
110710613
NCBI-ProteinID:
XP_021744633
LinkDB
All DBs
Position
Unknown
AA seq
701 aa
AA seq
DB search
MDKLPILQFEDKIVETVKNNLVTVLIGETGSGKSTQLSQILFRHGFADSGTICVTQPRRV
AAVSVARRVAQEMGVRLGEEVGYAIRFEDRTSTKTRIKYLTDGVLLRESLSDSELRSYSV
IILDEAHERSLNMDILMGLVKRLVGIRDSANFRVLITSATLEGEKVSEFFNGCPVLNVPG
KLFPVEVIYTDEVSKSFVEAALKKAIDIHVREPEGDILIFMTGQEDIEKLVQKLEDRVRS
LEEGSVMDAVIYPLHGSLPPELQVRVFNPPPSNCRRFIVATNIAETSLTVDGVVYVIDSG
YVKQRQYNPQTGMYSLDIVQISRVQANQRAGRAGRTRPGKCYRLYSSVVYKDDFMEAAVP
EIQRTSLAGSVLYLKSLDLPGIDILKFDFLDPPSYASLGDALRQLYLIDAIDENGAITSV
GRTMAELPLEPSLSRTLIAANENGSLSQALTIAAMLSAETSLLPSFAKGSEKKRKHTPLK
LPDGGGLGDHIQLLQIFELWNKTGYDIEWCKEYGLQIRGMSFVKDVRGQLCQLMLKMAKC
ATEVQGKHKSRERKMNYRNLRRALCVGYANQLAERMIRHNGYRTLGLKSQLVQVHPSSVL
QPDEDGMLPNYVVYQELITTSSPFMRNVCTVEMQWISPILKKLETLDINKLSGGFTDPED
GIKEKDQGVSKKEDKDVESPADRDSKIQAARERFLARKVKK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atggataagctcccgattcttcaattcgaagacaaaatcgttgaaacagtcaagaacaac
ctcgtcactgtcttaatcggagaaactggttccggcaaaagtacccaactttcccaaatc
ctcttccgacatggtttcgccgattccggcaccatttgtgtcacacaacctcgccgtgtc
gccgccgtctccgtcgcacgccgtgtcgcccaagaaatgggggttcgacttggggaagaa
gttgggtacgcaattcgattcgaagatcgaacttcaacaaaaacccgaattaaataccta
actgacggtgttcttcttagagagagcttatctgattcagaacttcgatcatattctgtg
ataatcttggatgaagctcatgaaaggagtttgaatatggatattttgatgggtcttgtg
aaaagattggtgggtattcgtgattcggcgaattttagggttttgattacttcggcaact
cttgaaggggagaaagtttctgaattctttaatgggtgtcctgtgctaaatgtgcctggg
aagttgtttccggtggaggtgatatacacggatgaagtgagcaagagttttgtggaggcg
gcgttaaagaaggcgatcgatatacatgttcgggagccagaaggggatatattgatcttc
atgacaggtcaggaggatatagagaagttggtgcagaagctggaggatcgagttaggagc
ttagaggaaggttctgtaatggatgctgtgatttatccacttcatgggtcattgccaccc
gagttacaggttcgtgtttttaaccctccgccgagtaattgtaggagatttattgttgca
actaatattgctgaaacttctttgactgttgatggggttgtgtatgttattgattctggt
tatgttaagcaaagacagtataatcctcaaactgggatgtattcattagatattgtacag
attagtagagtgcaggctaaccaacgagcggggcgtgctgggaggacacgccccgggaaa
tgttataggttatattcatctgttgtgtataaagatgattttatggaggccgcggtgcct
gagatacagagaacctcacttgcagggagtgttctgtatctgaagtctttagacctccct
ggcattgatattcttaagtttgattttctggacccgccttcttatgcgtctttaggtgat
gcacttaggcagttgtatctcattgatgcaatagatgagaatggagcgataacgagtgtt
gggagaaccatggctgagcttccgttggagccttctttgtctaggactctaatagcggcc
aatgagaatggaagcctttcacaggctttgacaattgctgccatgttatcggcagaaact
tctttgcttcctagttttgctaaagggtctgaaaagaaacggaagcacactcccttgaag
cttcctgatggaggaggtttgggtgatcatatacaactgctgcagatttttgagttgtgg
aataaaacaggctatgatattgaatggtgtaaagagtatggattgcagatacgagggatg
tcatttgtcaaagatgttcgtgggcagctgtgtcagttaatgctgaagatggccaaatgt
gctacagaagttcaagggaaacacaagtccagagagagaaaaatgaattacagaaacttg
aggagggcattatgtgttggttatgctaatcagcttgctgaacgaatgattcgccataat
gggtatcgaacacttgggttgaagtctcagcttgttcaggtacatccatcatctgtgttg
caacccgatgaggatggaatgcttccgaattatgttgtgtaccaggagttgattacaaca
tctagtccatttatgcggaatgtgtgtactgtagaaatgcaatggatctcccccatctta
aagaagcttgagactcttgatatcaacaaactcagtgggggcttcactgatcctgaggat
ggcattaaagagaaagatcaaggtgtgtcaaagaaggaagataaggatgttgagtctcct
gcagatcgtgatagtaaaatccaagcagctcgagagcgtttccttgctcgtaaagtgaag
aagtag
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