Chenopodium quinoa (quinoa): 110710723
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Entry
110710723 CDS
T05764
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110710723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110710723
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110710723
Spliceosome [BR:
cqi03041
]
Complex C
Other components
Step II factors
110710723
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SLFN-g3_helicase
AAA_19
Flavi_DEAD
AAA_30
nSTAND3
AAA_24
T2SSE
AAA_16
AAA_7
AAA_14
Sigma54_activ_2
ATPase
ATPase_2
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
110710723
NCBI-ProteinID:
XP_021744757
LinkDB
All DBs
Position
Unknown
AA seq
1261 aa
AA seq
DB search
MEKPDIDSTIVTMEGEQSSVAGGLQKRGQERVVYKRPEKSLLGLDVLALAKRSESKQDIG
FKVPKERITSVASSLDEEEKSAVTDVDGDETVEHGGNKRRPNRRYRDAALSGTFQSKSSV
SEDQDDMHHSKRSIRSEVYSRNDRDSSQDNSRSERTKGTHRHGADGKDRSRGAEHERYDR
GSSGRWNDRGYGGEYDRKRGRYEGSRRTPGRSDWDDGRWEWDESPRHDSQHNSSNRYQPS
PSPMFIGASPDARLVSPWQTPRSGAYASPWDHVAPSPVPIRASGSSVRSSSSRYEGRSNK
QRRSTVDIQKLEDMDADGSATAIDQNPEITEDMRLQMEYNSDLAWYDREEGSNIYDIDNS
SFYLGDDATNQKKEVELAKRLMRRDGTMMSRAQSKRHSQLSADKQQWEDRQLMRSGAVRG
TEVQTEFDNEEENKVILLVHDTKPPFLDGRVVFTKQAEPVMPLKDPSSDMAIISRKGSAL
VREIREKQSMNKSRQRFWELAGSKLGDILGVEKTAEQVDADNAKVGEDGEIDFKEDAKFA
QHLKKDEAVSEFAMTKTLAQQRQYLPIYSVRDELLQVIRENQIVVVVGETGSGKTTQLTQ
YLHEDGYTSYGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTIIKY
MTDGVLLRETLKDAELERYRVIVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSATL
NAQKFSNFFGSVPIFHIPGRTFPVNTLYSKTPCEDYVEAAVKQAMTIHITSPPGDILIFM
TGQDEIETACYALAERMEQLTSSTQKAVAKLLILPIYSQLPADLQAKIFQRAEDGARKCI
VATNIAETSLTVDGIFYVIDTGYSKMKVYNPKMGMDALQVFPVSRAAADQRAGRAGRTGP
GTCYRLYTESAYLNEMLHSPVPEIQRTNLGNVVLLLKSLKIENLLDFEFMDPPPQENILN
SMYQLWVLGALNNVGSLTELGWKMVEFPLDPPLAKMLLMGEKLECLDEVLTIVSMLSVPK
VFFRPKDREEESDAAREKFFVPESDHLTLLNVYQQWKSNDYRGDWCNDHFLQVKALRKAR
EVRSQLMDILKQLKITLTSSPDWDVVRQAICSAYFQNSAKQKGIGEYVNTRNGIPCHLHP
TSALYGLGFTPEYVVYHELLLTSKEYMQCVTAVEPQWLSELGPMFFSVKESDTSLLEHKK
KQKEEKTAMEEEMESLRKEQEYAEKKRKDKEREKRDKENQKIAMPGSRRATTYLRPKKMG
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacctgatattgatagtacaatcgttactatggaaggagagcagtcaagtgtt
gctggaggactccaaaagcgaggacaagagcgtgttgtctataaacgtcctgagaaatct
cttttagggttagatgtccttgctcttgcaaaacgaagtgaatcgaaacaagatattggt
tttaaggttcccaaagaaagaatcacttctgttgcttcatctcttgatgaagaggagaag
tcagctgtgacagatgttgatggagatgagactgtggaacatggaggcaacaaacgacgg
cccaacaggagataccgtgatgctgctttgagtggtacttttcaatcaaaaagtagtgta
agtgaagaccaggatgacatgcatcactctaaaagaagcatccgttctgaagtctattca
agaaatgacagggatagctctcaagataactctagaagtgaaaggactaaaggtactcat
agacatggtgctgatggcaaagaccggagtcgtggtgcagaacatgaacggtatgacaga
ggctctagtggtaggtggaatgatagaggctatggtggtgaatatgacaggaaaagaggc
agatatgaaggatctaggagaacgcctggtagatcagattgggatgatgggagatgggag
tgggatgagtctccacgtcatgatagtcaacataattctagcaaccggtatcagccttca
ccatcccctatgttcattggagcatcccctgatgcgagattggtttctccttggcaaaca
ccgcgttctggagcttatgcttccccttgggatcatgttgccccgtcacctgtccctatt
cgagcttccggctcctctgtgcgatcttctagttctcggtacgaaggaagatcaaataag
caaagacgctctactgtcgatatacaaaaacttgaggatatggatgctgatggaagtgcc
acagctatagaccaaaatcctgaaatcacagaagatatgcgcttgcaaatggaatacaat
tcagatctcgcctggtatgatagagaagaaggcagcaatatttatgacattgacaattca
tcattctatcttggtgatgatgctacaaaccaaaagaaagaagtagaattggcaaaaagg
ctgatgagacgtgatggaactatgatgtcacgtgctcaaagcaagaggcattcacagctt
agtgcagacaagcaacagtgggaagatcgacaattgatgagatcaggcgctgttcgaggt
actgaggttcaaactgaatttgacaatgaagaagagaacaaggttattcttttagttcat
gatacaaaacctccatttttggatggtagagtggtttttactaagcaggcagaacctgtt
atgcctttgaaagatccatcttcagatatggctattatatctcgtaaaggatctgcttta
gtgcgggaaattcgtgaaaaacaaagcatgaataagtcacgccaacggttttgggaactt
gctggttctaaacttggggatatccttggcgttgagaagacagctgaacaggttgatgct
gataatgctaaggttggtgaagatggggaaattgatttcaaggaagatgcaaagtttgct
cagcatttaaagaaagacgaagctgtgagtgaatttgcaatgacgaaaactctggcacag
cagagacaatatcttcccatatactccgttagggatgaacttttacaggttattcgagag
aatcagattgtcgttgttgttggagagacaggctcaggaaagacaactcaactaacacag
tatttgcatgaagatggttacacttcatatggcattgttggatgcactcaaccaaggcgt
gttgctgcaatgagtgttgcaaaaagagttagtgaagagatggaaactgagctgggagac
aaagttgggtatgctatccgctttgaggatgttactggacccaataccataatcaagtac
atgacagatggagtacttctgcgtgaaactttgaaagatgctgaacttgagagatatcgt
gtcattgtgatggatgaagcgcatgagagatcactcaacacagatgtgttgtttggcata
ttaaaaaaggtggttgcccgacgtcgagattttaaactgattgtgacttcagcaactctt
aatgcgcagaagttttcaaatttttttggaagtgtcccaatattccatattcctgggaga
acatttcctgtcaataccttgtacagtaaaacaccttgtgaagactatgttgaagctgct
gtgaagcaagcaatgactatacacataacctcccctcccggcgacatccttatttttatg
actgggcaggatgagattgagacggcgtgctatgctcttgctgagcgcatggagcaacta
acttcctcaactcagaaggcagttgcaaagctcctaattcttcccatttactcacagctc
cctgctgatttacaagcaaaaatttttcaaagagctgaagatggagcgcgaaaatgcatt
gtagcaaccaacattgccgagacatctctaactgttgatggtatattttatgttattgac
actggatacagtaaaatgaaggtctacaatccaaagatgggtatggatgctcttcaagtt
tttccagtgagtcgtgctgcggctgaccagcgtgctggacgtgctggtagaactggtcct
ggcacttgctaccgactttatacagaaagtgcatatctgaatgagatgcttcatagtcct
gtacctgagattcagaggacaaatcttggaaatgtagttttgcttttgaaatctcttaaa
attgagaacttgctagacttcgaattcatggacccgcctccacaagagaacatcctcaac
tccatgtaccagttgtgggtgctaggtgcccttaacaatgttgggagcctgacagaactt
ggttggaaaatggtggaatttccattagacccgccactggcaaagatgctactgatgggt
gaaaagctggaatgccttgatgaggtgctaactattgtttccatgctttcagtacctaaa
gtatttttccgtcctaaagacagggaagaggagagtgatgcagctagggaaaagttcttt
gtgcctgaatcagatcacttgacacttctcaatgtgtaccagcaatggaaaagcaatgac
tatcgaggagattggtgcaatgatcattttctgcaggttaaagctttacgcaaggctagg
gaggttagatcacaacttatggatatactgaaacaactgaagataacccttacatcatct
cctgactgggatgtagttagacaagccatatgttctgcgtatttccagaactctgcaaag
cagaaggggattggtgagtatgttaatacaaggaatggcataccatgccatctacatcca
accagtgctctttatggattggggttcacgccagagtatgttgtttatcatgagctgctt
ttgacctcaaaagagtacatgcagtgtgtcactgctgtggagccgcaatggttatcagaa
ttagggccgatgttcttctcagttaaagagtcagatacatcattgttggagcataagaag
aaacagaaggaagagaagacagctatggaggaagaaatggagagtttgagaaaagaacaa
gaatatgcagagaaaaaaaggaaggataaagagagggaaaaacgtgataaagaaaaccaa
aaaattgctatgccagggtcacgacgagctaccacatacctgagacccaaaaagatgggt
ttgtaa
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