Chenopodium quinoa (quinoa): 110712236
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Entry
110712236 CDS
T05764
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110712236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110712236
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110712236
Spliceosome [BR:
cqi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
110712236
Complex C
U5 SnRNP specific factors
110712236
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
Motif
Other DBs
NCBI-GeneID:
110712236
NCBI-ProteinID:
XP_021746389
LinkDB
All DBs
Position
Unknown
AA seq
2172 aa
AA seq
DB search
MSNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRVA
KGKPPELEEKKKKSQKKKERDPNAEPGPARQSKKRRIQEESVLNVTEEGVYQPKTKETRA
AYEAMLSIIQQQLGGLPFNIVSAAADEILAVLKNDAIKYPEKKMEIEKLLTSMPATVFDS
LVNAGKMITDYQEGGDDVPTANGDGLDNEVGVAVEFEENDDDDDESDFGSVQDDEEDDED
IAEAGSAGGMQMGGGIGDEDMPDADEGMNLNVQDIDAYWLQRKISQAYDQQIDPQQCQNL
AEEALALLAEGEDREIENTLLTRLDYDRFNLVRFLVRNRRKIVWCTRLARAEDQEERKRI
EEEMMESGADLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESAVDGDRGRRGLTD
RDVDNGWLNGQRQVLDLENLAFNQGGRFMANKKTILPDGSFRHQAKGYEEVHIPALKAKP
FEKGEELVKISGMPDWAQPAFEGMTQLNRVQSRVYQTALFSAENILLCAPTGAGKTNVAV
LTILQQIALNRAPDGSFDHSSYKIVYVAPMKALVAEVVGNLSNRLKHYGVNVKELSGDQS
LTKQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR
TVRQIETTKDNIRLVGLSATLPNYEDVALFLRVDVEKGLFHFDNSYRPCPLAQQYIGINV
KKPLQRFQLMNDICYDKVMAVAGKHQVLVFVHSRKETAKTARAIRDTALAKDTLGKFLKE
DSASREILHAHTDLVRSNDLKDLLPYGFAIHNAGMNRADRQLVEDLFADGHVQVLVSTAT
LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGIIITGHT
ELQFYLSLMNQQLPIESQFISRLADQLNAEIVLGTVQNAREALNWIGYTYLYIRMLRNPT
LYGLAPDVLDRDLTLEERRADLIHSAATVLDKNNLIKYDRKSGYFQVTDLGRIASFYYIT
HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKVELAKLLERVPIPIKESLEE
PSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAARLMRALFEIVLKRGWAQLAEKALNL
CKMVQKRMWSVQTPLRQFTGISSEILMKLEKKELAWDRYYDLSSQELGELIRQQKMGRTL
HKFIHQFPKLNLAAHVQPITRSVLGVELTITPDFMWDDKIHGYVEPFWVIVEDNDGEYIL
HHEYFMLKKQYIDEDHTLNFTVPISEPLPPQYFIHVVSDRWLGSQSVLPVSFRHLILPEK
YPPPTELLDLQPLPVTALRNPSYEALYPEFRHFNPVQTQVFTVLYNADDNVLVAAPTGSG
KTICAEFAILRNHQKGPDSTMRVVYIAPIEALAKERFRDWERKFGKGLGLRVVELTGETA
TDLKLLEKGQIIVSTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR
MRYIASQVENKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGVDIA
NFEARMQAMTKPTYTAISVHAKNGKPAIVYVPTRKHASLTAVDLVTYASSDSGEKPIFLL
HSLEELQPFTDKIKDPNLKTTLGYGVGFLHEGLVSTDKEIVSQLFEAGWIQVCVMTSSMC
WGMPLLAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDKSGKCVILCHAPRK
EYYKKFLYEAFPVESHLHHYLHDNLNAEIVVGVIENKQDAVDYLTWTFMYRRLAQNPNYY
NLQGVSHRHLSDYLSELVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYISYTTIER
FSSSLTSKTKLKGLLEILASASEYSQLPVRPGEDDLIRKMIHHQRFSFENPKYTDPHVKA
NALLQAHFSRHPVGGNLAADQREVLLSASRLLQAMVDVISSNGWLNLALLAMEVSQMVTQ
GMWERDSMLLQLPHFTKELAKRCQENPGKSIETVFDLVEMEDDERQELLQMSDSQLLDIA
RFCNRFPNIDMTYEVVDSDSIGAGADVTMVVTLERDLEGRSEVGPVDALRYPKAKEEGWW
LVVGDTKTNQLLAIKRVALQRKSKVKLDFVAPPEVGKKTYTLYYMCDSYLGCDQEYNFTI
DVKEAGAAEDDS
NT seq
6519 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatctgggaggtggtgcggaggcacacgcacgtttcaagcagtatgaatacagg
gcaaattcgagtctagtgctcacgacagattcacgcccgagggatacccatgagcctact
ggtgagccggagtccttatatggtaaaattgacccaaagtcgttcggagatagggttgct
aaaggaaagcctccggagcttgaagagaagaagaagaaatctcaaaaaaagaaggaaagg
gacccaaatgcggagccagggcctgctcggcagagcaagaaacgccgtattcaggaggaa
agtgttctgaatgttactgaagaaggggtctaccagccaaaaactaaagaaactcgggct
gcttatgaggctatgctgagtattatccagcagcagctgggagggctgccatttaatatt
gtcagtgctgctgctgatgagattttggctgtattaaagaacgatgctattaagtaccca
gaaaagaagatggagattgagaagttgctgacttctatgcctgctactgtgtttgatagc
ctggttaatgctgggaagatgattactgattatcaagaaggtggtgatgatgtcccgact
gccaatggggatggtctcgataatgaagtgggtgttgcggtggagtttgaggagaatgat
gatgatgacgatgagagcgattttggctcggtgcaggatgatgaagaggatgatgaagat
attgctgaagcaggttccgctgggggtatgcaaatgggtggtggaattggtgatgaagat
atgcctgatgcggatgagggtatgaacctaaatgttcaggacattgatgcgtattggctt
cagaggaagatttctcaagcctatgatcagcaaattgatccacaacagtgccaaaatctt
gctgaagaagctctagcgttacttgcagaaggggaggatagggagattgagaatacactt
ttgactcgccttgactacgataggttcaaccttgtcaggttccttgtgcgtaataggcgg
aagattgtgtggtgtacccgcctggcccgagctgaagatcaagaggagcggaaaaggatt
gaagaagaaatgatggaatctggtgcagatttggctgccatcctggagcagttgcatgct
accagagccactgccaaggagaggcagaagaatctggagaagagtataagagaggaggct
cgtcgtttgaaagatgagagtgctgttgatggggaccgtggccgtagaggattgactgat
agagatgtcgataatggttggttgaatgggcagcggcaggtgcttgatctggaaaacctt
gctttcaaccaaggtggtcgtttcatggcaaacaagaagactatacttccagatggctct
tttcgccatcaggctaaaggatacgaagaggtccatattcctgctttgaaagccaagcca
tttgaaaaaggtgaagaactcgtgaagatatctggaatgccagattgggcacaaccagct
ttcgaagggatgacacaattgaatagggtgcagagtagagtttaccaaactgcactcttt
tcagctgaaaacattcttctttgtgctccgactggggcagggaagactaatgttgctgtc
ctcaccatattgcagcagattgctttgaatagagcaccagatggatcatttgaccacagc
agttataagatagtatatgtggctccaatgaaagctcttgtggctgaagtggtcggtaac
ttgtcaaaccggttgaagcattatggtgtgaatgtgaaggaattgagtggtgatcagtca
ttgaccaagcaacagatagatgaaactcagataattgttacaactccagagaaatgggat
atcataacaaggaagtcaggtgatcgaacatacactcagcttgtcaaacttctcataatt
gatgagattcatctgctccatgacaacagaggccctgtgctggaaagtatagttgccagg
acagttaggcaaattgaaacaacaaaagataatattcgactagttgggttatcagccacc
cttcctaactacgaggatgtggcattattcttgagggttgatgtagaaaaggggctattc
cactttgacaacagctatagaccttgcccgcttgcacaacaatatattggaatcaatgtg
aagaaaccactacagagattccagttgatgaatgacatttgctatgataaagtgatggct
gtggctggaaagcaccaagttcttgtttttgttcactcaagaaaagagacggcaaagact
gcccgtgctataagggatacagccttggcaaaggatacccttggtaaatttttgaaagaa
gatagtgcgagtcgtgagattcttcatgcacatactgatttagttagaagtaatgacctt
aaggatcttttaccttacggctttgcaattcataatgctgggatgaatagggctgatcgc
cagcttgtggaagatttgtttgctgatggtcacgtgcaagtcctagtttctacagccacc
cttgcttggggtgtcaatttgcctgcacacacagtgattataaagggaacccagatttat
aatcctgaaaagggagcttggacagaattgagtcctctggatgtaatgcagatgcttggg
cgtgcaggtagaccccagtatgatacttatggagagggaataatcattactggccatact
gaattgcaattctatctttctttgatgaatcaacagctccctattgaaagtcagtttatc
tcaaggttggctgatcagttgaatgctgaaattgttcttggtactgtacaaaatgctcga
gaagccctcaattggataggttacacatacctgtacattcggatgttacgtaatcctaca
ctttatggcttagctcctgatgtgctcgacagggaccttacactggaagagaggagagct
gacctgatccattcagcagcaactgttttggacaaaaataacttgattaaatatgatcgg
aaaagtggttacttccaggtcactgacttgggaaggattgccagtttttattacattaca
catggcacaatatccacttacaatgagcacttaaaaccgactatgggtgacattgagctt
tgtcggttattctccctcagtgaggaatttaaatacgttacagtgaggcaagatgaaaag
gttgaactggccaagcttttggaacgtgttccaattcccattaaagagagcttggaagag
cccagcgctaagattaatgttttacttcaagcgtatatttctcagttgaagcttgaaggc
ttgtctctaacatcagacatggtttatataacacagagtgcggcacgtcttatgagagct
ctttttgagatagttttgaaaagaggatgggctcagttggcagagaaggcgctaaatttg
tgtaaaatggttcagaagaggatgtggagcgtacagacaccactccgtcagtttactgga
atatctagcgaaattttgatgaagttggagaagaaggaactggcttgggataggtactat
gacctttcctctcaagaactgggagagctcataagacaacagaagatgggaaggactctt
cacaagttcattcatcagtttccaaagcttaaccttgctgcacatgtgcagcctattact
cgctctgttttaggagtggaactgacaatcacacctgatttcatgtgggatgacaagatt
catggatatgtggagcctttttgggttattgtggaggataatgatggtgaatacattctt
catcatgaatacttcatgctgaagaagcaatatattgatgaggaccataccctgaatttc
actgtgccaatatcagagcctctgcccccacaatatttcattcatgttgtttctgataga
tggttgggatcacagtctgttttgcctgtttcttttaggcatcttattttgcctgagaaa
tatcctcccccaacagaattgttggacttgcaaccactgcctgtgactgcattgagaaac
ccatcatatgaagccctttatccagaatttaggcacttcaaccctgtccagactcaggtt
ttcacggttctgtacaatgcagatgacaatgttttggttgctgcgccaactggtagtgga
aagacaatatgtgctgagtttgctatcttgcgaaaccaccagaaaggtcctgacagcacc
atgcgtgttgtctatatagcacctattgaagctctggccaaggagcgttttcgtgattgg
gaaaggaaatttggaaaaggacttggtttgcgagtcgttgaacttacaggagagacagca
actgacttgaagttacttgagaaagggcagataattgtaagtactcctgaaaaatgggat
gctttatcgcgacgctggaaacaaagaaagtatgttcagcaagtcagcctgttcatcatt
gatgagctccatcttattggtggtcaaggcggtcctgtgttggaagtgattgtctcgagg
atgagatacatagcaagtcaagtggagaacaagattcgcattgttgctttatcaacctct
cttgctaatgctaaggaccttggtgagtggataggtgcttcttcacatggtcttttcaac
tttccaccaggggttcgtcctgtacctcttgagattcacattcagggagtagatattgct
aattttgaggcaagaatgcaagctatgaccaagccaacctacactgctatatctgtccat
gctaagaatgggaaacctgctattgtatatgttccaactcggaagcatgcttcactcact
gcagttgaccttgtaacatatgctagttctgacagtggagagaagccaatatttttgctg
cattcattggaggagctgcagccttttactgataaaattaaggatccaaatctgaagacc
actcttggctatggtgtgggctttttgcatgaaggattagttagcactgataaggagatt
gtatcacagttatttgaagctggatggatccaagtttgtgttatgaccagttcaatgtgc
tggggaatgcctttgttggctcacttagtggtggtcatgggaactcagtactatgatggg
agagagaatgctcatactgattatccagtcactgatctgctccagatgatgggtcatgct
agtcggcctttgttggataagtctgggaagtgtgttatcctttgtcatgccccacgaaag
gaatattataaaaagttcttatatgaagcattccctgtagaaagtcatttgcaccactac
cttcatgacaatctgaatgcagaaattgtagttggagtaatcgagaataagcaagatgct
gtggattatctcacatggacatttatgtacagaaggcttgctcagaatcctaattactac
aatcttcagggtgtgagccataggcatttatcagattacctctcagagcttgtggagaac
actttgagtgatctggaagcaagtaaatgtgttgctattgaagatgatatggatctctct
cctctgaatctgggtatgatagcatcatattactacatcagctacaccacaatcgagcgt
tttagttcttcgttgacatctaaaacaaagctgaagggtctcctagagattttggcttcg
gcttcagagtattcgcagctgccagtacgtccgggggaggatgacttgattcgcaagatg
atacatcaccaaagattctcttttgagaatccaaagtacacagatccacatgtaaaagca
aatgctttgctgcaagcccacttttctaggcatccagttggtggtaacttggctgctgac
cagcgtgaagtgctcctttcagctagtagattgcttcaggctatggttgatgttatttcc
agcaatggttggctaaatcttgctcttcttgctatggaagtaagccagatggtgactcag
ggtatgtgggagcgagattccatgctattgcagcttccacatttcaccaaggagttggcc
aagagatgtcaagagaacccagggaagtctattgagactgtgtttgacctggtggaaatg
gaggatgatgagaggcaggagcttctacagatgtctgactcacagttgctggatattgcc
cgtttctgtaatcgtttccccaacattgatatgacttatgaggtggtcgatagtgacagc
atcggtgctggggcagatgtcacaatggtggttacccttgaacgagatcttgaagggagg
tcagaagtgggacctgttgatgcgcttagatatcccaaagctaaagaagaaggttggtgg
ttggtggtgggtgacacaaagactaaccaactgctagctattaagagggtcgctttacaa
cggaaatcaaaagtcaagcttgacttcgttgcacctcctgaagtcgggaagaagacttac
actttgtattacatgtgtgattcgtacttgggatgtgatcaggagtataactttaccatt
gatgtcaaagaagcaggagcagctgaagatgacagttga
DBGET
integrated database retrieval system
