Chenopodium quinoa (quinoa): 110712925
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Entry
110712925 CDS
T05764
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cqi
Chenopodium quinoa (quinoa)
Pathway
cqi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cqi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110712925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cqi03041
]
110712925
Enzymes [BR:
cqi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110712925
Spliceosome [BR:
cqi03041
]
Complex C
Other components
Step II factors
110712925
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
TsaE
AAA_16
ABC_tran
Sigma54_activ_2
T2SSE
PhoH
SLFN-g3_helicase
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
110712925
NCBI-ProteinID:
XP_021747081
LinkDB
All DBs
Position
Unknown
AA seq
1215 aa
AA seq
DB search
MAPQKEINGGDLEKMTYMSLISKVCSELETHAGVGDKILAEFIIELGHNCETVDEFDSEL
KKNGAEMPDYFVKTLLTIIHAILPPKPKNKGFDGKGDSSFSGLSIADGKARVKELEREIE
AEAEERRRKEGDDKDGGEMSRDRRDRDRDRDRDGGRGRGRDRDTDRDRGSHRDKERGRER
GRDKERDWDRDKIGRHDRQERYREGDDERYDDRHGKEGCVVEERRRRDRYENGSGDEEGG
DRREGGSSRRNQRPESDELELLTRVYKGKVSKVMSMGCFVQLHDFKGKEGLVHVSEIANR
RIADPKDVVKRGQEVYVKVISVSGQKLSFSMKDVDQDTGKDLLPLKKKSSQDDALRANPS
SGIGSNKRIGLSGIPLGEENVSGSSRRPLKRMSSPEKWETQQLIASGVLSVREFPSFDDE
GDGMLYQEETAEEELEIELNEDEPAFLQGQTRYSAEMSPVKIFKNPEGSMSRAAALQSAL
TKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKEA
YGKALAFGQKSKLSIQEQRNSLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLA
EAGYTTRGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTD
GMLLREILIDENLSQYSVVMLDEAHERTIHTDVLFGLLKQLINRRPDLRLIVTSATLDAE
KFSGYFFNCNIFTIPGRTFPVEILYTKQPETDYLDAALITVLQIHLTEPEGDVLLFLTGQ
EEIDFACQCLYDRMKVLGRNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAE
ASLTIDGIFYVVDPGFAKQNVYNPKQGLDSLIITPISQASAKQRAGRAGRTGPGKCYRLY
TESAYRNEMSPTSIPEIQRINLGMTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYS
LGALDEEGLLTKLGRKMAEFPMEPPLSKMLLASVDLGCSDEILTIIAMITTGNVFYRPRE
KQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFIQSRSLRRAQDVRKQLL
SIMDKYKLDVVSAGKDFTKIRKAIAAGFFFHAARKDPQEGYRTLVENQPVYIHPSSALFQ
RQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFFKVADPTKMSKRKRQERIEPLYD
RYHEPNSWRLSKRRA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggcgcctcagaaagaaatcaatggcggcgatttggaaaaaatgacttatatgtcactt
atatcaaaggtatgttctgaactcgaaactcatgctggtgttggcgacaaaattctcgcc
gagtttatcatcgaattaggtcataattgtgagacagtcgatgaatttgatagtgaattg
aagaaaaatggtgctgaaatgcctgactattttgttaaaactttgttaacgattattcat
gctattttaccacctaaacctaagaataagggttttgatgggaagggtgattccagtttt
tctgggttgtcgattgctgatggtaaagctagggttaaggaattggagagggagattgag
gccgaggcggaggagcggcggaggaaggagggtgatgataaagatgggggtgagatgagc
cgggatcggcgcgatagggatagagatagggatagggatggtggtagaggtagaggtagg
gatagggatacggatagggatcggggtagtcatagggataaagaaaggggtagagagcgt
ggtagggataaagaaagggattgggatagggataagataggaagacatgataggcaggag
aggtatagggaaggtgatgatgagcggtacgatgatcgacatgggaaggaagggtgtgtg
gtggaggaacggcgtaggagggataggtatgagaatgggagtggtgatgaggaagggggt
gataggagggaaggtggtagcagtcggaggaatcagaggccggagtctgatgaacttgag
ttgttgactcgggtttataagggaaaggtttccaaagtaatgtcaatggggtgttttgtt
cagttacatgattttaagggtaaggaggggttggttcatgtttctgagatagcaaatagg
cggattgctgatcctaaagatgttgtgaagaggggtcaagaggtttatgtgaaggtgatt
tcagtttcggggcagaagttgagtttttcaatgaaggatgtggatcaagatactgggaaa
gatttgctccctctaaagaagaagagttcacaagatgatgcattaagggcgaatcctagt
agtggaattgggtcaaacaagaggataggtctttctgggattccgttaggtgaagagaat
gtgtctggttcttcacgtcgccctctgaagcgtatgagttctccagaaaagtgggaaaca
cagcagctgattgcgtcaggggttctgagtgtgagggagtttcccagtttcgatgatgaa
ggtgatgggatgctttatcaggaagaaacagctgaagaagaacttgagatagaattgaac
gaagatgaacctgcttttttgcagggccaaacacgatactctgctgagatgtcacctgtt
aaaatctttaagaatccagagggctccatgagccgtgctgctgctctgcagtccgctctt
acgaaagaaagaagagaggtgcgggagcaacaacagaggacaatgcttgattcaattcca
aaggatcttaatcgtccttgggaagatccaatgccagaaactggggagagacatcttgca
caggagttgagaggtgttggcttatcagcatatgatatgccagaatggaagaaggaagct
tatggtaaggctttggcatttggccagaagtccaagctgtctatccaggagcaaaggaat
agcttgcccatctacaaattaaagaaagagttgatccaagctgtgcatgataaccaggtt
ttggttgtgattggtgaaacaggatctgggaaaactacccaggtaactcagtatcttgca
gaggcaggttacaccactagaggtaaaattgggtgtacacagccccgtagagtggcagcc
atgtcagtagccaagagggttgctgaggaatttggttgtcgattaggggaggaagttgga
tatgctatccgatttgaggattgtactggtccagatactgtgattaagtatatgacagat
ggtatgcttcttagggagattttgattgatgaaaatctaagtcagtattcagttgttatg
cttgatgaagctcacgagagaacaatacatacagatgtcctttttgggttgctcaaacag
ctaattaatcggaggcctgatcttcgtttgattgtcacctctgcaacactggatgcagag
aaattttcaggctacttttttaattgtaatatcttcactatccctggcagaacttttcct
gtggagatattgtataccaagcaacctgagactgattacctagatgctgctttaatcaca
gtgctacagattcacttgacagagcctgaaggtgacgttctcctcttccttactgggcag
gaggaaattgattttgcgtgccagtgtctttacgatagaatgaaagttcttggcagaaat
gttcctgaactgataattcttccagtttatagtgcccttcctagtgaaatgcaatctagg
atctttgatcctgcccctcctgggaagagaaaagtagttgtggctacaaatattgctgaa
gcttctttgactattgatgggatattttatgtggttgacccgggatttgcaaagcaaaat
gtatataatccgaagcaggggcttgattctcttattataaccccaatttcacaagcatca
gccaagcaaagagcaggtcgtgctgggcgtacggggcctgggaaatgctatcgtctttat
acagagagtgcatatcggaatgaaatgtctcccacctcaattcccgagattcagagaatc
aatcttggaatgactacgttgactatgaaagcaatgggaattaatgatttgctgtctttt
gattttatggatcctccttctcctcaagcacttatttctgctatggagcaattgtatagt
ctgggagctttggatgaggaaggccttctgaccaaattgggtcggaagatggcagagttc
cccatggaacccccattgtcgaagatgcttttggccagtgtggaccttggctgtagtgat
gagattttgaccataattgcaatgattacgacaggcaatgtgttctacagacctagggag
aaacaagcacaagcagatcaaaagagggccaaatttttccagcctgagggtgatcatcta
acactgcttgctgtctatgaggcctggaaagcgaaaaatttttctggaccatggtgcttt
gaaaattttatccagtcccgatctttgcgtagggcacaagatgtcaggaaacaacttctc
agtattatggacaagtataaattggatgttgtgagcgctgggaaggactttaccaaaata
aggaaagcaatcgctgctggatttttctttcatgcagccaggaaagatccacaggagggt
tacagaacactggtcgaaaatcagcctgtttacatccatcctagcagtgcgttatttcag
agacaaccagattgggtgatctaccatgaactagttatgaccacaaaagaatatatgagg
gaagtgactgttgtggatccaaagtggcttgttgagttggctcctagatttttcaaagtt
gcagatcccacaaaaatgagcaagcggaagcgtcaagaacgcattgagccactttatgat
agatatcacgagcctaattcttggcgtttgagcaaaaggcgtgcttaa
DBGET
integrated database retrieval system
